TARDBP (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000003593 T40109_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.876
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000004478 RRM 115 183
ENSORLP00000004478 RRM 202 253
ENSORLP00000004481 RRM 107 175
ENSORLP00000004481 RRM 194 245

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
TARDBP Homo sapiens ENSG00000120948 D 0.876
AAM33247 Xenopus laevis AAM33247 I 0.893
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.950
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.893
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.950
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.893
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.901
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.884
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.876
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.876
TARDBP Procavia capensis ENSPCAG00000010442 I 0.893
TARDBP Oryzias latipes ENSORLG00000005188 I 0.917
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.885
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.901
AAH44271 Xenopus laevis AAH44271 I 0.851
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.901
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.734
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.720
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.724
PHUM575260 Pediculus humanus PHUM575260 I 0.703
GE11522 Drosophila yakuba FBgn0229324 I 0.705
GK15864 Drosophila willistoni FBgn0217867 I 0.713
GG19989 Drosophila erecta FBgn0112189 I 0.705
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.893
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.901
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.901
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.909
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.893
LOC100051482 Equus caballus ENSECAG00000008338 I 0.901
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.868
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.893
tardbp Danio rerio ENSDARG00000040031 I 0.792
tardbpl Danio rerio ENSDARG00000004452 I 0.934
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.893
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.901
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.901
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.909
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.884
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.754
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.901
TARDBP Echinops telfairi ENSETEG00000004358 I 0.893
TARDBP Felis catus ENSFCAG00000000050 I 0.893
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.901
Tardbp Mus musculus ENSMUSG00000041459 I 0.884
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.901
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.876
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.868
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.884
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.901
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.901
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.884
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.983
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.910
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.762