CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH1
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000006932
T40143_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.867
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000008709
RRM
10
81
VRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEEDLKVAVKKDRETMGHRYVE
ENSORLP00000008709
RRM
110
179
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIE
ENSORLP00000008709
RRM
284
349
VHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMRELV
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.867
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.881
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.795
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.876
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.867
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.795
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.876
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.867
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.862
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.810
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.805
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.852
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.862
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.862
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.876
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.752
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.795
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.757
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.795
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.862
HNRNPH3
Oryzias latipes
ENSORLG00000010499
I
0.729
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.876
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.852
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.795
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.862
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.762
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.862
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.881
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.800
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.876
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.862
AAH70969
Xenopus laevis
AAH70969
I
0.857
AAH77770
Xenopus laevis
AAH77770
I
0.876
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.781
HNRNPH3
Takifugu rubripes
ENSTRUG00000005350
I
0.738
ENSRNOG00000015533
Rattus norvegicus
ENSRNOG00000015533
I
0.726
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.771
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.795
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.862
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.795
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.876
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.790
HNRNPH3
Tetraodon nigroviridis
ENSTNIG00000013788
I
0.743
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.952
AAI10708
Xenopus laevis
AAI10708
I
0.876
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.852
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.900
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.795
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.862
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.905
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.724
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.800
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.876
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.790
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.781
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.862
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.876
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.795
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.862
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.795
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.876
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.876
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.800
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.862
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.781
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.867
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.876
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.862
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.867
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.876
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.881
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.795
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.776
ENSMMUG00000017392
Macaca mulatta
ENSMMUG00000017392
I
0.729
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.867
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.795
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.881
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.876
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.800
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.885
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.788
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.819
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.876
HNRNPF
Homo sapiens
ENSG00000169813
I
0.795
HNRNPH3
Gasterosteus aculeatus
ENSGACG00000016118
I
0.729
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.948
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.881
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.867
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.795
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.795