CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cugbp2
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000023661
T41163_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000023436
RRM
60
131
MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMH
ENSRNOP00000023436
RRM
152
220
LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS
ENSRNOP00000023436
RRM
449
519
LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK
ENSRNOP00000054894
RRM
33
104
MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMH
ENSRNOP00000054894
RRM
125
193
LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS
ENSRNOP00000054894
RRM
400
442
SLLQQQSAAGSQKEGFVSYDNPVSAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
95 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER2
Bos taurus
ENSBTAG00000030686
N
0.000
RAVER2
Macaca mulatta
ENSMMUG00000018565
N
0.000
RAVER2
Monodelphis domestica
ENSMODG00000001242
N
0.000
RAVER2
Otolemur garnettii
ENSOGAG00000011157
N
0.000
ENSPPYG00000001271
Pongo pygmaeus
ENSPPYG00000001271
N
0.000
RAVER2
Pan troglodytes
ENSPTRG00000000824
N
0.000
RAVER2
Pteropus vampyrus
ENSPVAG00000007172
N
0.000
RAVER2
Tupaia belangeri
ENSTBEG00000009004
N
0.000
RAVER2
Taeniopygia guttata
ENSTGUG00000009973
N
0.000
RAVER2
Meleagris gallopavo
ENSMGAG00000011806
N
0.000
RAVER2
Loxodonta africana
ENSLAFG00000012508
N
0.000
RAVER2
Canis familiaris
ENSCAFG00000018617
N
0.000
LOC100406727
Callithrix jacchus
ENSCJAG00000016724
N
0.000
RAVER2
Cavia porcellus
ENSCPOG00000005986
N
0.000
Raver2
Dipodomys ordii
ENSDORG00000002498
N
0.000
RAVER2
Equus caballus
ENSECAG00000022014
N
0.000
RAVER2
Homo sapiens
ENSG00000162437
N
0.000
RAVER2
Gallus gallus
ENSGALG00000011026
N
0.000
RAVER2
Gorilla gorilla
ENSGGOG00000016447
N
0.000
RAVER2
Tarsius syrichta
ENSTSYG00000006019
N
0.000