B9I4G0_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0012s13920 T45635_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s13920.1 RRM 4 65
POPTR_0012s13920.1 RRM 97 160

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK11625.1 Cannabis sativa PK11625.1 N 0.742
e_gw1.5.1267.1 Selaginella moellendorfii e_gw1.5.1267.1 N 0.730
estExt_fgenesh1_pg.C_1440043 Physcomitrella patens estExt_fgenesh1_pg.C_1440043 N 0.746
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.709
Glyma10g38400.1 Glycine max Glyma10g38400.1 N 0.857
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.701
Glyma20g29460.1 Glycine max Glyma20g29460.1 N 0.857
mgf011722m Mimulus guttatus mgf011722m N 0.817
mgf013695m Mimulus guttatus mgf013695m N 0.727
mgf016209m Mimulus guttatus mgf016209m N 0.727
Medtr1g129430 Medicago truncatula Medtr1g129430 N 0.817
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.709
LjT39A22.50.nd Lotus japonicus LjT39A22.50.nd N 0.833
MDP0000288452 Malus x domestica MDP0000288452 N 0.873
MDP0000583927 Malus x domestica MDP0000583927 N 0.766
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.817
ppa005993m Prunus persica ppa005993m N 0.881
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.724
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.828
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.701
PK15848.1 Cannabis sativa PK15848.1 N 0.701
PK24775.1 Cannabis sativa PK24775.1 N 0.873
RS40 Arabidopsis thaliana AT4G25500-TAIR-G N 0.810
RS41 Arabidopsis thaliana AT5G52040-TAIR-G N 0.802
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.770
BRADI3G02227 Brachypodium distachyon BRADI3G02227 N 0.770
XM_002869624.1 Arabidopsis lyrata fgenesh2_kg.7__1711__AT4G25500.1 N 0.817
XM_002864102.1 Arabidopsis lyrata fgenesh2_kg.8__1091__AT5G52040.2 N 0.810
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.770
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.817
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.810
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.976
29742.m001371 Ricinus communis 29742.m001371 N 0.701
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.929
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.929
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.701
ppa008562m Prunus persica ppa008562m N 0.750