cassava43646.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava43646.valid.m1 T49413_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava43646.valid.m1 RRM 36 106

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.746
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.915
PHUM535920 Pediculus humanus PHUM535920 N 0.704
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.958
B9MYE5_POPTR Populus trichocarpa POPTR_0017s04640 N 0.930
SB04G025800 Sorghum bicolor Sb04g025800 N 0.944
29983.m003140 Ricinus communis 29983.m003140 N 0.972
91084 Helobdella robusta 91084 N 0.704
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 1.000
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.718
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.958
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.746
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.746
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.746
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.746
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.746
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.732
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.746
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.944
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.958
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.704
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.718
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.746
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.718
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.746
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.944
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.789
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.789
MDP0000315402 Malus x domestica MDP0000315402 N 0.986
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.944
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.944
mgf009822m Mimulus guttatus mgf009822m N 0.887
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.803
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.704
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.718
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.718
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.944
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.944
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.704
mgf009384m Mimulus guttatus mgf009384m N 0.845
ppa010346m Prunus persica ppa010346m N 0.986
Bm1_02935 Brugia malayi Bm1_02935 N 0.718
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.944
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.944
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.718
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.746
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.746
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.732
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.746
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.732
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.704
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.704
LOAG_03270 Loa loa LOAG_03270 N 0.732
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.704
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.718
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.732
PK11911.1 Cannabis sativa PK11911.1 N 0.930
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.704
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.718
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.704
NCBP2 Equus caballus ENSECAG00000016153 N 0.746
NCBP2 Homo sapiens ENSG00000114503 N 0.746
NCBP2 Gallus gallus ENSGALG00000006843 N 0.704
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.718
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.746
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.746
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.732
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.746
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.732
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.732
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.746
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.718
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.732
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.746
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.732
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.732
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.704
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.746
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.746
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.746
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.704
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.746