Cucsa.093720 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.093720 T49546_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.093720.1 RRM 88 156

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.899
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.754
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.971
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.971
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.913
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.899
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.928
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.899
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.739
gw1.9.853.1 Trichoderma virens gw1.9.853.1 N 0.700
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.884
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.884
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.768
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.928
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.899
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.884
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.899
e_gw1.4.511.1 Trichoderma reesei e_gw1.4.511.1 N 0.700
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.855
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.768
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.913
estExt_fgenesh1_pm.C_10632 Trichoderma atroviride estExt_fgenesh1_pm.C_10632 N 0.700
mgf005737m Mimulus guttatus mgf005737m N 0.899
mgf006490m Mimulus guttatus mgf006490m N 0.899
MDP0000123472 Malus x domestica MDP0000123472 N 0.870
MDP0000186271 Malus x domestica MDP0000186271 N 0.884
MDP0000243651 Malus x domestica MDP0000243651 N 0.913
MDP0000258062 Malus x domestica MDP0000258062 N 0.870
MDP0000562891 Malus x domestica MDP0000562891 N 0.870
MDP0000623378 Malus x domestica MDP0000623378 N 0.870
Pc16g02770 Penicillium chrysogenum Pc16g02770 N 0.700
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.928
ppa010052m Prunus persica ppa010052m N 0.899
fgenesh1_pm.00083_#_765 Aspergillus carbonarius fgenesh1_pm.00083_#_765 N 0.700
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.768
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.768
mgf007186m Mimulus guttatus mgf007186m N 0.942
mgf014092m Mimulus guttatus mgf014092m N 0.826
mgf023117m Mimulus guttatus mgf023117m N 0.884
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.855
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.928
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.928
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.899
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.899
EDP44971.1 Malassezia globosa EDP44971.1 N 0.700
ppa011157m Prunus persica ppa011157m N 0.986
CNBG_5499 Cryptococcus neoformans CNBG_5499 N 0.700
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.928
ACLA_026010 Aspergillus clavatus CADACLAG00002760 N 0.700
AFUA_1G09490 Aspergillus fumigatus CADAFUAG00007045 N 0.700
An08g01040 Aspergillus niger CADANGAG00006423 N 0.714
ANIA_01340 Aspergillus nidulans CADANIAG00001272 N 0.700
AO090012000924 Aspergillus oryzae CADAORAG00006445 N 0.700
NFIA_016120 Neosartorya fischeri CADNFIAG00000670 N 0.700
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.899
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.884
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.899
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.855
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.928
MCYG_08495 Microsporum canis MCYG_08495 N 0.700
MGG_07252 Magnaporthe oryzae MGG_07252 N 0.700
UM02401 Ustilago maydis UM02401 N 0.714
PK03244.1 Cannabis sativa PK03244.1 N 0.913
PK11764.1 Cannabis sativa PK11764.1 N 0.942
PK23225.1 Cannabis sativa PK23225.1 N 0.913
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.899
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.884
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.928
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.870
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.928
29772.m000320 Ricinus communis 29772.m000320 N 0.957
29806.m000954 Ricinus communis 29806.m000954 N 0.899
30147.m014356 Ricinus communis 30147.m014356 N 0.899
30147.m014359 Ricinus communis 30147.m014359 N 0.913
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.884
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.957
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.971
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.812
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.884
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.928
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.884
SB10G007620 Sorghum bicolor Sb10g007620 N 0.928
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.913
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.841
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.899
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.884
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.870
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.870
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.884
SB01G028780 Sorghum bicolor Sb01g028780 N 0.826
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.913
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.899