CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os11g10900
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os11g10900
T12343_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os11g10900.1
CCHC ZF
609
626
GSCFNCGELGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
659 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6H776_BOVIN
Bos taurus
ENSBTAG00000004940
I
0.000
ACH69784
Xenopus laevis
ACH69784
I
0.000
ACH69785
Xenopus laevis
ACH69785
I
0.000
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.000
BRUNOL4
Homo sapiens
ENSG00000101489
D
0.000
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000011707
I
0.000
CELF4
Takifugu rubripes
ENSTRUG00000015481
I
0.000
CELF4
Tursiops truncatus
ENSTTRG00000016826
I
0.000
CELF4
Oryzias latipes
ENSORLG00000008913
I
0.000
CELF4
Pteropus vampyrus
ENSPVAG00000009204
I
0.000
CELF4
Tetraodon nigroviridis
ENSTNIG00000010679
I
0.000
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.000
Celf4
Mus musculus
ENSMUSG00000024268
I
0.000
celf4
Xenopus tropicalis
ENSXETG00000020486
I
0.000
CELF4
Macaca mulatta
ENSMMUG00000006866
I
0.000
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.000
CELF4
Gorilla gorilla
ENSGGOG00000013920
I
0.000
celf5
Danio rerio
ENSDARG00000071375
I
0.000
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.000
CELF6
Tursiops truncatus
ENSTTRG00000002503
I
0.000
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.000
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.000
CELF6
Macropus eugenii
ENSMEUG00000010988
I
0.000
ENSDARG00000076682
Danio rerio
ENSDARG00000076682
I
0.000
ENSPPYG00000009118
Pongo pygmaeus
ENSPPYG00000009118
I
0.000
LOC100386457
Callithrix jacchus
ENSCJAG00000021135
I
0.000