CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHDRBS2
(
Monodelphis domestica
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMODG00000018714
T19106_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.988
KHDRBS3
M033_0.6
Homo sapiens
AUAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00034
0.845
KHDRBS1
M160_0.6
Homo sapiens
AUAAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00169
0.765
Khdrbs1
M060_0.6
Mus musculus
UAAAAVV
RNAcompete
Ray et al.(2013)
RNCMPT00062
0.765
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000023326
KH
61
141
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPP
Links
Other
KH
family RBPs
Other
Monodelphis domestica
RBPs
113 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30131.m007124
Ricinus communis
30131.m007124
N
0.000
30170.m014131
Ricinus communis
30170.m014131
N
0.000
BGIOSIBCE032955
Oryza indica
BGIOSIBCE032955
N
0.000
BRADI3G32520
Brachypodium distachyon
BRADI3G32520
N
0.000
cassava13805.valid.m1
Manihot esculenta
cassava13805.valid.m1
N
0.000
cassava25039.valid.m1
Manihot esculenta
cassava25039.valid.m1
N
0.000
cassava3214.m1
Manihot esculenta
cassava3214.m1
N
0.000
chr1.CM0231.600.nd
Lotus japonicus
chr1.CM0231.600.nd
N
0.000
Glyma04g01070.1
Glycine max
Glyma04g01070.1
N
0.000
GRMZM2G127168
Zea mays
GRMZM2G127168
N
0.000
GRMZM2G127340
Zea mays
GRMZM2G127340
N
0.000
GSVIVG00009823001
Vitis vinifera
GSVIVG00009823001
N
0.000
GSVIVG00016581001
Vitis vinifera
GSVIVG00016581001
N
0.000
GSVIVG00024180001
Vitis vinifera
GSVIVG00024180001
N
0.000
LOC_Os10g39820
Oryza sativa
LOC_Os10g39820
N
0.000
MDP0000273719
Malus x domestica
MDP0000273719
N
0.000
Medtr3g162980
Medicago truncatula
Medtr3g162980
N
0.000
Medtr3g162990
Medicago truncatula
Medtr3g162990
N
0.000
SB01G030150
Sorghum bicolor
Sb01g030150
N
0.000