CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Ornithorhynchus anatinus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSOANG00000000261
T19152_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.891
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.891
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.891
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.891
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000000448
KH
94
132
RQDSGCKVQISPRDSGGLPERSVSLTGAPESVQKAKMML
ENSOANP00000000448
KH
159
223
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDHYKVQQACEMV
ENSOANP00000000448
KH
248
310
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSOANP00000000448
KH
350
415
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
ENSOANP00000000449
KH
14
51
RQDSGCKVQISPNSGGLPERSVSLTGAPESVQKAKMML
ENSOANP00000000449
KH
78
142
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDHYKVQQACEMV
ENSOANP00000000449
KH
167
229
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSOANP00000000449
KH
269
334
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Ornithorhynchus anatinus
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI61696
Xenopus laevis
AAI61696
I
0.814
AAI69923
Xenopus laevis
AAI69923
I
0.818
AAN77160
Xenopus laevis
AAN77160
I
0.818
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.891
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.891
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.760
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.711
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.884
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.717
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.931
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.891
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.888
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.891
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.891
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.705
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.713
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.891
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.729
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.888
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.826
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.891
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.891
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.909
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.891
KHSRP
Danio rerio
ENSDARG00000026489
I
0.806
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.801
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.888
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.787
KHSRP
Felis catus
ENSFCAG00000003731
I
0.891
KHSRP
Homo sapiens
ENSG00000088247
D
0.891
KHSRP
Myotis lucifugus
ENSMLUG00000015543
I
0.935
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.876
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.845
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.888
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.891
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.756
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.775
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.888
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.891
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.891