Pum2 (Rattus norvegicus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSRNOG00000006180 T24263_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.989
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.989
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.989
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.985
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.985
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.898
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.898
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.809
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.809
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.809
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.809
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.809
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.809
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000008359 PUF 724 757
ENSRNOP00000008359 PUF 759 791
ENSRNOP00000008359 PUF 795 829
ENSRNOP00000008359 PUF 831 865
ENSRNOP00000008359 PUF 867 901
ENSRNOP00000008359 PUF 903 937
ENSRNOP00000008359 PUF 939 973
ENSRNOP00000008359 PUF 985 1016
ENSRNOP00000035814 PUF 486 519
ENSRNOP00000035814 PUF 521 553
ENSRNOP00000035814 PUF 557 591
ENSRNOP00000035814 PUF 593 627
ENSRNOP00000035814 PUF 629 663
ENSRNOP00000035814 PUF 665 699
ENSRNOP00000035814 PUF 701 735
ENSRNOP00000035814 PUF 747 778
ENSRNOP00000059013 PUF 565 598
ENSRNOP00000059013 PUF 600 632
ENSRNOP00000059013 PUF 636 668
ENSRNOP00000059013 PUF 674 708
ENSRNOP00000059013 PUF 710 744
ENSRNOP00000059013 PUF 746 780
ENSRNOP00000059013 PUF 782 816
ENSRNOP00000059013 PUF 828 859

Links

Other PUF family RBPs
Other Rattus norvegicus RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29772.m000320 Ricinus communis 29772.m000320 N 0.000
29806.m000954 Ricinus communis 29806.m000954 N 0.000
30147.m014356 Ricinus communis 30147.m014356 N 0.000
30147.m014359 Ricinus communis 30147.m014359 N 0.000
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.000
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.000
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.000
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.000
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.000
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.000
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.000
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.000
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.000
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.000
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.000
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.000
CAOG_03505 Capsaspora owczarzaki CAOG_03505 N 0.000
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.000
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.000
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.000
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.000
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.000
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.000
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.000
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.000
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.000
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.000
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.000
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.000
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.000
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.000
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.000
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.000
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.000
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.000
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.000
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.000
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.000
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.000
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.000
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.000
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.000
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.000
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.000
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.000
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.000
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.000
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.000
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.000
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.000
MDP0000123472 Malus x domestica MDP0000123472 N 0.000
MDP0000186271 Malus x domestica MDP0000186271 N 0.000
MDP0000243651 Malus x domestica MDP0000243651 N 0.000
MDP0000258062 Malus x domestica MDP0000258062 N 0.000
MDP0000562891 Malus x domestica MDP0000562891 N 0.000
MDP0000623378 Malus x domestica MDP0000623378 N 0.000
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.000
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.000
mgf005737m Mimulus guttatus mgf005737m N 0.000
mgf006490m Mimulus guttatus mgf006490m N 0.000
mgf007186m Mimulus guttatus mgf007186m N 0.000
mgf014092m Mimulus guttatus mgf014092m N 0.000
mgf023117m Mimulus guttatus mgf023117m N 0.000
pab2 Schizosaccharomyces pombe SPBC16E9.12c N 0.000
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.000
PK03244.1 Cannabis sativa PK03244.1 N 0.000
PK11764.1 Cannabis sativa PK11764.1 N 0.000
PK23225.1 Cannabis sativa PK23225.1 N 0.000
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.000
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.000
ppa010052m Prunus persica ppa010052m N 0.000
ppa011157m Prunus persica ppa011157m N 0.000
SB01G028780 Sorghum bicolor Sb01g028780 N 0.000
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.000
SB10G007620 Sorghum bicolor Sb10g007620 N 0.000
UM02401 Ustilago maydis UM02401 N 0.000
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.000
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.000
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.000