RO3G_10200 (Rhizopus oryzae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 RO3G_10200 T30469_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.706
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
RO3T_10199 RRM 13 83
RO3T_10199 RRM 100 171

Links

Other RRM family RBPs
Other Rhizopus oryzae RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001303 Ricinus communis 30183.m001303 I 0.713
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.713
AAH45264 Xenopus laevis AAH45264 I 0.720
AAH77458 Xenopus laevis AAH77458 I 0.720
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.713
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.713
BC1G_13457 Botrytis cinerea BC1G_13457 N 0.713
BDBG_09421 Blastomyces dermatitidis BDBG_09421 N 0.706
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.706
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.727
CC1G_10837 Coprinopsis cinerea CC1G_10837 N 0.734
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.720
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.713
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.713
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.713
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.713
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.713
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.713
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.713
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.713
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.713
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.713
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.706
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.713
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.713
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.713
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.713
estExt_fgenesh1_pm.C_120017 Batrachochytrium dendrobatidis estExt_fgenesh1_pm.C_120017 N 0.713
estExt_fgenesh2_pm.C_20717 Agaricus bisporus estExt_fgenesh2_pm.C_20717 N 0.727
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.706
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.706
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.706
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.734
estExt_Genewise1Plus.C_150062 Mycosphaerella fijiensis estExt_Genewise1Plus.C_150062 N 0.713
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.881
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.811
estExt_Genewise1Plus.C_920074 Postia placenta estExt_Genewise1Plus.C_920074 I 0.720
estExt_GeneWisePlus_worm.C_60233 Laccaria bicolor estExt_GeneWisePlus_worm.C_60233 N 0.706
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.706
e_gw1.2.1555.1 Heterobasidion annosum e_gw1.2.1555.1 N 0.727
e_gw1.2.2306.1 Schizophyllum commune e_gw1.2.2306.1 I 0.706
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.706
e_gwh2.1.820.1 Phanerochaete chrysosporium e_gwh2.1.820.1 N 0.748
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.734
fgenesh2_kg.11_#_983_#_7076_1_CFOT Serpula lacrymans fgenesh2_kg.11_#_983_#_7076_1_CFOT N 0.720
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.706
genemark.276_g Pleurotus ostreatus genemark.276_g N 0.713
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.720
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.713
GSTUMT00011313001 Tuber melanosporum GSTUMT00011313001 N 0.713
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.720
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.713
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.720
ISCW010601 Ixodes scapularis ISCW010601 I 0.706
LOC100054350 Equus caballus ENSECAG00000024737 I 0.713
MDP0000131129 Malus x domestica MDP0000131129 I 0.720
MDP0000320945 Malus x domestica MDP0000320945 I 0.720
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.720
PABG_07859 Paracoccidioides brasiliensis PABG_07859 N 0.706
PK08238.1 Cannabis sativa PK08238.1 I 0.727
ppa007508m Prunus persica ppa007508m I 0.706
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.713
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.713
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.958
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.713
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.713
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.713
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.713
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.713
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.713
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.713
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.713
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.713
SF3B4 Gallus gallus ENSGALG00000013352 I 0.713
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.713
SF3B4 Homo sapiens ENSG00000143368 I 0.713
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.713
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.713
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.713
sf3b4 Danio rerio ENSDARG00000018574 D 0.713
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.713
Smp_067420 Schistosoma mansoni Smp_067420 D 0.706
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.713
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.762
SS1G_09077 Sclerotinia sclerotiorum SS1G_09077 N 0.713
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.706