ENSCJAG00000015222 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000015222 T35622_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.803
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.803
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.803
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000028062 RRM 37 102
ENSCJAP00000028062 RRM 125 194
ENSCJAP00000028076 RRM 42 107
ENSCJAP00000028076 RRM 130 199

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.752
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.724
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.704
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.708
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.745
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.716
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.725
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.704
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.734
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.729
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.729
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.703
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.717
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.700
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.725
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.731
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.704
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.731
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.721
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.702
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.738
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.722
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.721
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.721
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.722
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.739
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.712
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.708
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.715
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.739
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.739
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.727
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.748
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.710
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.731
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.701
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.736
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.710
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.703
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.724
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.703
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.724
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.752
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.724
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.717
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.752
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.703
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.724
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.752
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.724
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.738
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.752
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.752
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.750
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.710
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.719
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.721
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.766
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.731
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.724
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.745
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.724
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.719
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.752
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.722
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.738
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.729
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.712
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.736
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.763
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.729
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.730
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.731
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.712
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.738
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.738
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.752
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.724
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.759
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.745
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.703
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.731
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.738
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.745
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.752
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.752
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.709
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.731
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.721
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.745
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.714
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.745
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.752
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.710
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.724
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.752
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.752
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.710
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.724
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.752
HNRNPA1 Homo sapiens ENSG00000135486 D 0.752
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.752
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.752
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.752
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.752
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.731
LOC100054206 Equus caballus ENSECAG00000006699 I 0.743
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.752
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.752
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.738
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.731
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.745
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.745
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.752
LOC785445 Bos taurus ENSBTAG00000025621 I 0.724
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.752
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.752
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.752
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.715
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.752
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.746
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.724
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.731
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.703
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.732
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.754