TARDBP (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000003755 T36756_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.942
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000003409 RRM 106 174
ENSEEUP00000003409 RRM 193 244

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
170286 Helobdella robusta 170286 I 0.702
AAH44271 Xenopus laevis AAH44271 I 0.893
AAM33247 Xenopus laevis AAM33247 I 0.934
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.770
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 1.000
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.975
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 1.000
ENSMMUG00000003940 Macaca mulatta ENSMMUG00000003940 I 0.754
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.942
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.992
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.942
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.734
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.736
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.756
GE11522 Drosophila yakuba FBgn0229324 I 0.705
GG19989 Drosophila erecta FBgn0112189 I 0.705
GK15864 Drosophila willistoni FBgn0217867 I 0.713
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 1.000
LOC100051482 Equus caballus ENSECAG00000008338 I 1.000
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.950
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.762
PHUM575260 Pediculus humanus PHUM575260 I 0.711
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.992
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.975
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.983
TARDBP Homo sapiens ENSG00000120948 D 0.942
TARDBP Tupaia belangeri ENSTBEG00000000263 I 1.000
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.983
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.868
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.861
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.868
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.934
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.852
TARDBP Vicugna pacos ENSVPAG00000009543 I 1.000
TARDBP Tursiops truncatus ENSTTRG00000001312 I 1.000
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.959
TARDBP Pteropus vampyrus ENSPVAG00000014773 N 0.738
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.975
TARDBP Loxodonta africana ENSLAFG00000014421 I 1.000
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.893
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.861
TARDBP Felis catus ENSFCAG00000000050 I 0.983
TARDBP Echinops telfairi ENSETEG00000004358 I 0.983
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.967
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.992
tardbp Danio rerio ENSDARG00000040031 I 0.777
TARDBP Macropus eugenii ENSMEUG00000006548 I 1.000
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.975
TARDBP Microcebus murinus ENSMICG00000003838 I 0.746
TARDBP Procavia capensis ENSPCAG00000010442 I 0.975
TARDBP Oryzias latipes ENSORLG00000005188 I 0.868
TARDBP Oryzias latipes ENSORLG00000003593 I 0.901
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.992
TARDBP Otolemur garnettii ENSOGAG00000016721 I 0.738
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 1.000
Tardbp Mus musculus ENSMUSG00000041459 I 0.959
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.967
tardbpl Danio rerio ENSDARG00000004452 I 0.909
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.942