fmr1 (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000037433 T18624_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.762
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000054472 KH 220 279
ENSDARP00000054472 KH 283 352
ENSDARP00000054475 KH 220 279
ENSDARP00000054475 KH 283 352

Links

Other KH family RBPs
Other Danio rerio RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.723
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.769
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.754
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.731
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.723
FXR2 Bos taurus ENSBTAG00000005462 I 0.762
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.762
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.723
FXR2 Canis familiaris ENSCAFG00000016685 I 0.769
FXR1 Canis familiaris ENSCAFG00000011582 I 0.723
FMR1 Canis familiaris ENSCAFG00000019085 I 0.802
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.723
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.762
fxr1 Danio rerio ENSDARG00000022968 I 0.715
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.746
FXR2 Echinops telfairi ENSETEG00000018613 I 0.754
FXR1 Echinops telfairi ENSETEG00000006891 I 0.723
FXR1 Equus caballus ENSECAG00000007560 I 0.723
LOC100147323 Equus caballus ENSECAG00000007051 I 0.762
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.762
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.715
FXR2 Felis catus ENSFCAG00000009620 I 0.762
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.811
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.731
FMR1 Gasterosteus aculeatus ENSGACG00000018742 I 0.842
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.715
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.723
FXR1 Homo sapiens ENSG00000114416 D 0.723
FXR2 Homo sapiens ENSG00000129245 D 0.762
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.754
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.723
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.762
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.723
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.731
FXR2 Microcebus murinus ENSMICG00000014799 I 0.762
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.762
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.715
Fxr1 Mus musculus ENSMUSG00000027680 I 0.731
Fxr2 Mus musculus ENSMUSG00000018765 I 0.762
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.723
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.731
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.754
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.715
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.762
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.723
FXR1 Oryzias latipes ENSORLG00000011787 I 0.715
FXR2 Oryzias latipes ENSORLG00000011571 I 0.725
FMR1 Oryzias latipes ENSORLG00000009094 I 0.863
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.762
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.723
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.762
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.723
FXR2 Procavia capensis ENSPCAG00000013184 I 0.754
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.762
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.731
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.762
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.762
FXR1 Sus scrofa ENSSSCG00000011769 I 0.723
FXR2 Sus scrofa ENSSSCG00000017953 I 0.762
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.738
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.710
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.723
FMR1 Takifugu rubripes ENSTRUG00000005362 N 0.754
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.723
FMR1 Tetraodon nigroviridis ENSTNIG00000010121 N 0.769
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.710
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.708
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.762
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.762
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.723
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.762
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.723
P51115 Xenopus laevis P51115 I 0.715
Q2KHP9 Xenopus laevis Q2KHP9 I 0.817
P51113 Xenopus laevis P51113 I 0.809
AAY79166 Xenopus laevis AAY79166 I 0.715
AAY79165 Xenopus laevis AAY79165 I 0.715
AAI70204 Xenopus laevis AAI70204 I 0.817
AAI31885 Xenopus laevis AAI31885 I 0.715
AAI12953 Xenopus laevis AAI12953 I 0.817
AAH73457 Xenopus laevis AAH73457 I 0.715
AAH43638 Xenopus laevis AAH43638 I 0.715
AAC59683 Xenopus laevis AAC59683 I 0.809
AAC59682 Xenopus laevis AAC59682 I 0.708
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.715
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.832
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.731