RBM5 (Sus scrofa)
RanBP ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1) 		IPR001876
IPR000504 		ENSSSCG00000011395 T25660_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM5
M145_0.6 		Homo sapiens SAAGGRG RNAcompete
Ray et al.(2013)
RNCMPT00154 		1.000
RBM5
M053_0.6 		Homo sapiens GARGGWR RNAcompete
Ray et al.(2013)
RNCMPT00055 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000012148 RRM 100 171
ENSSSCP00000012148 RanBP ZF 181 210
ENSSSCP00000012148 RRM 233 302

Links

Other RanBP ZF,RRM family RBPs
Other Sus scrofa RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009637 Ailuropoda melanoleuca Ame_R009637 N 0.000
SPEN Anolis carolinensis ENSACAG00000013761 N 0.000
SPEN Bos taurus ENSBTAG00000018729 N 0.000
SPEN Callithrix jacchus ENSCJAG00000008527 N 0.000
SPEN Canis familiaris ENSCAFG00000016132 N 0.000
SPEN Cavia porcellus ENSCPOG00000014036 N 0.000
SPEN Danio rerio ENSDARG00000074332 N 0.000
spen Danio rerio ENSDARG00000074245 N 0.000
LOC100053790 Equus caballus ENSECAG00000008833 N 0.000
SPEN Erinaceus europaeus ENSEEUG00000010255 N 0.000
SPEN Gallus gallus ENSGALG00000003662 N 0.000
SPEN Gasterosteus aculeatus ENSGACG00000005341 N 0.000
SPEN Gasterosteus aculeatus ENSGACG00000001176 N 0.000
SPEN Gorilla gorilla ENSGGOG00000012041 N 0.000
SPEN Homo sapiens ENSG00000065526 N 0.000
SPEN Loxodonta africana ENSLAFG00000004524 N 0.000
SPEN Macaca mulatta ENSMMUG00000008026 N 0.000
SPEN Macropus eugenii ENSMEUG00000002422 N 0.000
SPEN Meleagris gallopavo ENSMGAG00000005180 N 0.000
SPEN Monodelphis domestica ENSMODG00000003411 N 0.000
Spen Mus musculus ENSMUSG00000040761 N 0.000
SPEN Myotis lucifugus ENSMLUG00000010144 N 0.000
SPEN Ochotona princeps ENSOPRG00000015800 N 0.000
SPEN Ornithorhynchus anatinus ENSOANG00000004165 N 0.000
SPEN Oryctolagus cuniculus ENSOCUG00000010840 N 0.000
SPEN Oryzias latipes ENSORLG00000018414 N 0.000
SPEN Oryzias latipes ENSORLG00000020159 N 0.000
XR_024490.1 Pan troglodytes ENSPTRG00000000210 N 0.000
ENSPPYG00000001834 Pongo pygmaeus ENSPPYG00000001834 N 0.000
SPEN Procavia capensis ENSPCAG00000009543 N 0.000
SPEN Pteropus vampyrus ENSPVAG00000013794 N 0.000
LOC690911 Rattus norvegicus ENSRNOG00000033556 N 0.000
SPEN Spermophilus tridecemlineatus ENSSTOG00000005637 N 0.000
SPEN Taeniopygia guttata ENSTGUG00000002064 N 0.000
SPEN Takifugu rubripes ENSTRUG00000001017 N 0.000
SPEN Takifugu rubripes ENSTRUG00000011123 N 0.000
SPEN Tarsius syrichta ENSTSYG00000007170 N 0.000
SPEN Tetraodon nigroviridis ENSTNIG00000010907 N 0.000
SPEN Tetraodon nigroviridis ENSTNIG00000014666 N 0.000
SPEN Tupaia belangeri ENSTBEG00000003628 N 0.000
SPEN Tursiops truncatus ENSTTRG00000015704 N 0.000