CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAEL013869
(
Aedes aegypti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAEL013869
T32429_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAEL013869-PA
RRM
16
86
VFVGNIPYEATEEKLKDIFCEVGPVISLKLVFDRESGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRALR
Links
Other
RRM
family RBPs
Other
Aedes aegypti
RBPs
128 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s2502g11t1
Acyrtosiphon pisum
DGIL_AUG5s2502g11t1
N
0.930
DGIL_AUG5s12011g4t1
Acyrtosiphon pisum
DGIL_AUG5s12011g4t1
N
0.930
Ame_R018612
Ailuropoda melanoleuca
Ame_R018612
N
0.831
Ame_R018329
Ailuropoda melanoleuca
Ame_R018329
N
0.817
ENSACAG00000004388
Anolis carolinensis
ENSACAG00000004388
N
0.845
AGAP010918
Anopheles gambiae
AGAP010918
N
0.972
AGAP004414
Anopheles gambiae
AGAP004414
N
0.831
amel4_ncbi_hmm3649
Apis mellifera
amel4_ncbi_hmm3649
N
0.915
XM_002887343.1
Arabidopsis lyrata
Al_scaffold_0002_1857
N
0.761
CSTF64
Arabidopsis thaliana
AT1G71800-TAIR-G
N
0.761
BGIBMGA006476
Bombyx mori
BGIBMGA006476
N
0.930
CSTF2_BOVIN
Bos taurus
ENSBTAG00000003547
N
0.845
BRADI4G24180
Brachypodium distachyon
BRADI4G24180
N
0.746
e_gw.65.105.1
Branchiostoma floridae
e_gw.65.105.1
N
0.859
e_gw.65.110.1
Branchiostoma floridae
e_gw.65.110.1
N
0.859
CSTF2
Callithrix jacchus
ENSCJAG00000004422
N
0.845
CSTF2T
Callithrix jacchus
ENSCJAG00000005033
N
0.831
CSTF2
Canis familiaris
ENSCAFG00000017551
N
0.845
CSTF2T
Canis familiaris
ENSCAFG00000015567
N
0.831
PK22244.1
Cannabis sativa
PK22244.1
N
0.775
estExt_Genewise1.C_550102
Capitella teleta
estExt_Genewise1.C_550102
N
0.732
CSTF2
Cavia porcellus
ENSCPOG00000015255
N
0.845
ENSCPOG00000004195
Cavia porcellus
ENSCPOG00000004195
N
0.831
CSTF2T
Choloepus hoffmanni
ENSCHOG00000011888
N
0.831
CSTF2
Choloepus hoffmanni
ENSCHOG00000012803
N
0.803
ENSCING00000017649
Ciona intestinalis
ENSCING00000017649
N
0.817
ENSCSAVG00000010770
Ciona savignyi
ENSCSAVG00000010770
N
0.803
Cucsa.364140
Cucumis sativus
Cucsa.364140
N
0.775
CpipJ_CPIJ012662
Culex pipiens
CpipJ_CPIJ012662
N
0.986
CPIJ012662
Culex quinquefasciatus
CPIJ012662
N
0.986
cstf2
Danio rerio
ENSDARG00000044009
N
0.831
PASA_GEN_0100181
Daphnia pulex
PASA_GEN_0100181
N
0.817
GF16912
Drosophila ananassae
FBgn0093932
N
0.930
GG22991
Drosophila erecta
FBgn0115148
N
0.930
GH18352
Drosophila grimshawi
FBgn0125820
N
0.930
CstF-64
Drosophila melanogaster
FBgn0027841
N
0.930
GI23336
Drosophila mojavensis
FBgn0146063
N
0.930
GL24357
Drosophila persimilis
FBgn0161947
N
0.930
GA20525-RA
Drosophila pseudoobscura
FBgn0080519
N
0.930
GM17877
Drosophila sechellia
FBgn0172784
N
0.930
GD19237
Drosophila simulans
FBgn0190742
N
0.930
GJ10336
Drosophila virilis
FBgn0197622
N
0.930
GK14167
Drosophila willistoni
FBgn0216173
N
0.930
GE25546
Drosophila yakuba
FBgn0242611
N
0.930
CSTF2
Echinops telfairi
ENSETEG00000004931
N
0.817
CSTF2
Equus caballus
ENSECAG00000009325
N
0.831
CSTF2
Felis catus
ENSFCAG00000007000
N
0.845
CSTF2T
Felis catus
ENSFCAG00000013011
N
0.831
Q5ZLS0_CHICK
Gallus gallus
ENSGALG00000006760
N
0.845
CSTF2
Gasterosteus aculeatus
ENSGACG00000017326
N
0.831
Glyma10g36350.1
Glycine max
Glyma10g36350.1
N
0.775
Glyma20g31220.1
Glycine max
Glyma20g31220.1
N
0.775
ENSGGOG00000026139
Gorilla gorilla
ENSGGOG00000026139
N
0.831
CSTF2
Gorilla gorilla
ENSGGOG00000022267
N
0.845
ENSGGOG00000022117
Gorilla gorilla
ENSGGOG00000022117
N
0.831
112541
Helobdella robusta
112541
N
0.718
CSTF2T
Homo sapiens
ENSG00000177613
N
0.831
CSTF2
Homo sapiens
ENSG00000101811
N
0.845
XP_002159315.1
Hydra magnipapillata
XP_002159315.1
N
0.761
ISCW015573
Ixodes scapularis
ISCW015573
N
0.817
LjSGA_018671.1
Lotus japonicus
LjSGA_018671.1
N
0.775
CSTF2T
Loxodonta africana
ENSLAFG00000002058
N
0.831
CSTF2
Loxodonta africana
ENSLAFG00000000474
N
0.845
CSTF2T
Macaca mulatta
ENSMMUG00000010845
N
0.831
CSTF2
Macaca mulatta
ENSMMUG00000013008
N
0.845
ENSMEUG00000007875
Macropus eugenii
ENSMEUG00000007875
N
0.845
ENSMEUG00000011186
Macropus eugenii
ENSMEUG00000011186
N
0.845
MDP0000208337
Malus x domestica
MDP0000208337
N
0.746
MDP0000142436
Malus x domestica
MDP0000142436
N
0.775
MDP0000283046
Malus x domestica
MDP0000283046
N
0.775
CSTF2
Microcebus murinus
ENSMICG00000014121
N
0.845
mgf012202m
Mimulus guttatus
mgf012202m
N
0.775
mgf002767m
Mimulus guttatus
mgf002767m
N
0.775
ENSMODG00000011785
Monodelphis domestica
ENSMODG00000011785
N
0.845
Cstf2
Mus musculus
ENSMUSG00000031256
N
0.845
Cstf2t
Mus musculus
ENSMUSG00000053536
N
0.831
CSTF2T
Myotis lucifugus
ENSMLUG00000011187
N
0.831
CSTF2
Myotis lucifugus
ENSMLUG00000004598
N
0.845
nasonia_NCBI_hmm235054
Nasonia vitripennis
nasonia_NCBI_hmm235054
N
0.915
e_gw.312.28.1
Nematostella vectensis
e_gw.312.28.1
N
0.873
SNAPOd2T00016915001
Oikopleura dioica
SNAPOd2T00016915001
N
0.746
ENSOANG00000004208
Ornithorhynchus anatinus
ENSOANG00000004208
N
0.817
CSTF2
Oryctolagus cuniculus
ENSOCUG00000010468
N
0.845
CSTF2T
Oryctolagus cuniculus
ENSOCUG00000004647
N
0.803
BGIOSIBCE033690
Oryza indica
BGIOSIBCE033690
N
0.732
LOC_Os11g07490
Oryza sativa
LOC_Os11g07490
N
0.761
CSTF2
Oryzias latipes
ENSORLG00000001380
N
0.831
CSTF2T
Pan troglodytes
ENSPTRG00000002510
N
0.831
CSTF2
Pan troglodytes
ENSPTRG00000022090
N
0.845
PHUM441150
Pediculus humanus
PHUM441150
N
0.803
gw1.36.17.1
Physcomitrella patens
gw1.36.17.1
N
0.704
estExt_fgenesh1_pm.C_80118
Phytophthora capsici
estExt_fgenesh1_pm.C_80118
N
0.732
PITG_14249
Phytophthora infestans
PITG_14249
N
0.732
fgenesh1_pg.C_scaffold_74000038
Phytophthora ramorum
fgenesh1_pg.C_scaffold_74000038
N
0.732
s_451557
Phytophthora sojae
s_451557
N
0.732
ENSPPYG00000002441
Pongo pygmaeus
ENSPPYG00000002441
N
0.831
ENSPPYG00000020541
Pongo pygmaeus
ENSPPYG00000020541
N
0.845
CSTF2T
Procavia capensis
ENSPCAG00000000046
N
0.831
ppa004010m
Prunus persica
ppa004010m
N
0.775
CSTF2T
Pteropus vampyrus
ENSPVAG00000006274
N
0.831
D3ZKA4_RAT
Rattus norvegicus
ENSRNOG00000022436
N
0.831
RO3G_14170
Rhizopus oryzae
RO3G_14170
N
0.704
28644.m000926
Ricinus communis
28644.m000926
N
0.789
SPRG_10503
Saprolegnia parasitica
SPRG_10503
N
0.761
gw1.20.80.1
Selaginella moellendorfii
gw1.20.80.1
N
0.704
CSTF2T
Sorex araneus
ENSSARG00000002013
N
0.831
SB05G004860
Sorghum bicolor
Sb05g004860
N
0.761
CSTF2T
Spermophilus tridecemlineatus
ENSSTOG00000005624
N
0.831
SPPG_01899
Spizellomyces punctatus
SPPG_01899
N
0.718
XP_001186020.1
Strongylocentrotus purpuratus
XP_001186020.1
N
0.817
XP_001181887.1
Strongylocentrotus purpuratus
XP_001181887.1
N
0.817
ENSSSCG00000009884
Sus scrofa
ENSSSCG00000009884
N
0.831
CSTF2
Sus scrofa
ENSSSCG00000012486
N
0.845
ENSSSCG00000010430
Sus scrofa
ENSSSCG00000010430
N
0.831
CSTF2
Taeniopygia guttata
ENSTGUG00000002253
N
0.845
CSTF2
Takifugu rubripes
ENSTRUG00000004323
N
0.831
CSTF2
Tetraodon nigroviridis
ENSTNIG00000016860
N
0.831
fgeneshTA2_pg.C_scaffold_5000618
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_5000618
N
0.789
CSTF2
Tupaia belangeri
ENSTBEG00000010029
N
0.803
CSTF2T
Tursiops truncatus
ENSTTRG00000003341
N
0.831
CSTF2
Tursiops truncatus
ENSTTRG00000013556
N
0.845
CSTF2
Vicugna pacos
ENSVPAG00000006466
N
0.803
GSVIVG00013670001
Vitis vinifera
GSVIVG00013670001
N
0.775
AAH80037
Xenopus laevis
AAH80037
N
0.845
AAH41291
Xenopus laevis
AAH41291
N
0.845
AAB50269
Xenopus laevis
AAB50269
N
0.845
cstf2
Xenopus tropicalis
ENSXETG00000009642
N
0.845
GRMZM2G174919
Zea mays
GRMZM2G174919
N
0.761