PTBP2 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000000940 T37380_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.724
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.724
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.724
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000001220 RRM 55 112
ENSGACP00000001220 RRM 173 239
ENSGACP00000001220 RRM 327 395
ENSGACP00000001220 RRM 455 512

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.816
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.823
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.714
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.714
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.816
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.816
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.702
PTBP2 Danio rerio ENSDARG00000015901 I 0.854
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.701
LOC100057336 Equus caballus ENSECAG00000015783 I 0.819
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.824
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.718
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.843
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.816
PTBP2 Homo sapiens ENSG00000117569 I 0.819
PTBP1 Homo sapiens ENSG00000011304 D 0.721
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.816
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.816
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.714
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.824
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.718
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.736
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.714
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.812
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.816
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.797
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.819
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.816
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.847
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.873
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.721
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.816
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.721
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.819
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.702
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.819
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.728
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.714
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.721
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.823
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.816
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.923
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.816
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.706
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.816
AAF00041 Xenopus laevis AAF00041 I 0.710
AAH45068 Xenopus laevis AAH45068 I 0.718