Ptbp1 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000002835 T36425_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.906
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.906
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.906
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000002665 RRM 61 117
ENSDORP00000002665 RRM 186 252
ENSDORP00000002665 RRM 365 431
ENSDORP00000002665 RRM 501 546

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.920
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.910
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.906
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.906
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.906
PTBP1 Homo sapiens ENSG00000011304 D 0.906
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.902
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.902
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.902
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.898
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.898
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.891
PTBP1 Equus caballus ENSECAG00000018845 I 0.887
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.879
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.879
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.867
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.867
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.867
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.856
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.855
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.840
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.836
AAH45068 Xenopus laevis AAH45068 I 0.825
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.820
AAF00041 Xenopus laevis AAF00041 I 0.817
ptbp1a Danio rerio ENSDARG00000019362 I 0.790
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.776
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.774
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.763
ptbp1b Danio rerio ENSDARG00000031907 I 0.758
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.758
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.755
AAH97557 Xenopus laevis AAH97557 I 0.747
ROD1 Danio rerio ENSDARG00000043757 I 0.742
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.739
ROD1 Sus scrofa ENSSSCG00000005466 I 0.738
ROD1 Equus caballus ENSECAG00000021243 I 0.738
Rod1 Mus musculus ENSMUSG00000028382 I 0.735
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.735
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.734
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.733
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.732
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.732
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.732
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.728
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.728
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.728
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.728
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.728
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.728
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.728
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.728
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.728
ROD1 Homo sapiens ENSG00000119314 I 0.728
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.728
ROD1 Bos taurus ENSBTAG00000016750 I 0.727
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.724
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.724
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.724
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.724
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.724
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.724
PTBP2 Homo sapiens ENSG00000117569 I 0.724
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.724
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.724
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.724
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.724
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.724
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.724
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.724
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.724
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.724
LOC100057336 Equus caballus ENSECAG00000015783 I 0.721
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.720
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.720
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.716
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.712
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.710
ROD1 Canis familiaris ENSCAFG00000003015 I 0.704
PTBP2 Danio rerio ENSDARG00000015901 I 0.704
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.702
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.701