AAF00041 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAF00041 T59439_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.891
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.891
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.891
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAF00041 RRM 64 119
AAF00041 RRM 189 255
AAF00041 RRM 360 426
AAF00041 RRM 477 542

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH45068 Xenopus laevis AAH45068 I 0.953
AAH97557 Xenopus laevis AAH97557 I 0.926
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.914
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.914
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.899
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.899
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.899
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.895
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.895
PTBP1 Homo sapiens ENSG00000011304 D 0.891
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.891
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.891
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.891
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.891
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.891
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.888
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.887
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.883
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.879
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.872
PTBP1 Equus caballus ENSECAG00000018845 I 0.868
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.840
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.836
ptbp1a Danio rerio ENSDARG00000019362 I 0.833
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.829
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.829
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.817
ptbp1b Danio rerio ENSDARG00000031907 I 0.813
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.812
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.812
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.809
ROD1 Sus scrofa ENSSSCG00000005466 I 0.809
ROD1 Equus caballus ENSECAG00000021243 I 0.809
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.805
Rod1 Mus musculus ENSMUSG00000028382 I 0.805
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.802
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.802
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.798
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.798
ROD1 Homo sapiens ENSG00000119314 I 0.798
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.798
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.798
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.795
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.794
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.794
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.794
ROD1 Bos taurus ENSBTAG00000016750 I 0.793
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.790
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.790
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.786
ROD1 Danio rerio ENSDARG00000043757 I 0.781
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.770
ROD1 Canis familiaris ENSCAFG00000003015 I 0.770
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.767
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.767
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.767
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.767
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.764
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.764
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.764
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.764
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.764
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.764
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.764
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.764
PTBP2 Homo sapiens ENSG00000117569 I 0.764
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.764
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.764
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.764
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.764
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.764
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.764
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.763
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.762
LOC100057336 Equus caballus ENSECAG00000015783 I 0.761
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.760
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.756
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.754
PTBP2 Danio rerio ENSDARG00000015901 I 0.751
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.751
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.748
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.745
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.726
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.725
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.720
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.710