CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIAL1
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000003365
T37409_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.850
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.850
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000004414
RRM
11
79
LYVGNLSRDVTEILILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDAAAALAAMNGRKILGKEVK
ENSGACP00000004414
RRM
99
169
VFVGDLSPEITTEDVKAAFAPFGKISDARVVKDLTTGKSKGYGFVSFYNKLDAENSIINMGGQWLGGRQIR
ENSGACP00000004414
RRM
207
272
VYCGGIQSGLSEHLMRQTFSPFGQIMEIRVFPEKGYSFIRRFSSHDSAAHAIVSVNGTAIEGHIVK
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
71 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002890939.1
Arabidopsis lyrata
scaffold_103602.1
N
0.000
AT1G32360
Arabidopsis thaliana
AT1G32360-TAIR-G
N
0.000
BRADI3G16360
Brachypodium distachyon
BRADI3G16360
N
0.000
BRADI3G16377
Brachypodium distachyon
BRADI3G16377
N
0.000
PK04103.1
Cannabis sativa
PK04103.1
N
0.000
Cucsa.312990
Cucumis sativus
Cucsa.312990
N
0.000
Glyma01g10610.1
Glycine max
Glyma01g10610.1
N
0.000
chr4.LjT10E08.110.nc
Lotus japonicus
chr4.LjT10E08.110.nc
N
0.000
MDP0000209929
Malus x domestica
MDP0000209929
N
0.000
cassava5467.m1
Manihot esculenta
cassava5467.m1
N
0.000
cassava25690.m1
Manihot esculenta
cassava25690.m1
N
0.000
Medtr8g078060
Medicago truncatula
Medtr8g078060
N
0.000
mgf004101m
Mimulus guttatus
mgf004101m
N
0.000
mgf003951m
Mimulus guttatus
mgf003951m
N
0.000
mgf012162m
Mimulus guttatus
mgf012162m
N
0.000
BGIOSIBCE026569
Oryza indica
BGIOSIBCE026569
N
0.000
LOC_Os08g06330
Oryza sativa
LOC_Os08g06330
N
0.000
B9GZ92_POPTR
Populus trichocarpa
POPTR_0003s09240
N
0.000
B9MU37_POPTR
Populus trichocarpa
POPTR_0001s02330
N
0.000
ppa008182m
Prunus persica
ppa008182m
N
0.000
30054.m000804
Ricinus communis
30054.m000804
N
0.000
gw1.11.272.1
Selaginella moellendorfii
gw1.11.272.1
N
0.000
GSVIVG00013136001
Vitis vinifera
GSVIVG00013136001
N
0.000