PABPN1L (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOGAG00000000433 T39802_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000000389 RRM 141 210

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.718
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.803
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.718
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.718
PABPN1L Bos taurus ENSBTAG00000023752 N 0.887
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.757
Bm1_48895 Brugia malayi Bm1_48895 I 0.700
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.718
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.718
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.704
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.857
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.718
pabpn1 Danio rerio ENSDARG00000045373 I 0.743
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.718
LOC100051357 Equus caballus ENSECAG00000000378 I 0.886
LOC100055599 Equus caballus ENSECAG00000011652 I 0.718
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.831
PABPN1 Gallus gallus ENSGALG00000006242 I 0.831
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.729
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.718
PABPN1L Homo sapiens ENSG00000205022 I 0.845
PABPN1 Homo sapiens ENSG00000100836 D 0.718
LOAG_03634 Loa loa LOAG_03634 I 0.700
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.714
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.718
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.845
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.845
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.718
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.845
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.817
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.718
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.732
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.775
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.718
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.718
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.789
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.873
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.718
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.817
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.718
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.729
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.718
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.718
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.845
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.718
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.845
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.831
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.718
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.718
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.831
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.718
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.900
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.729
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.729
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.704
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.873
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.700
Q9DDY9 Xenopus laevis Q9DDY9 I 0.704
Q804A5 Xenopus laevis Q804A5 N 0.732
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.704
Q6TY21 Xenopus laevis Q6TY21 I 0.718
AAR26263 Xenopus laevis AAR26263 I 0.718
AAR26262 Xenopus laevis AAR26262 I 0.704
AAO33927 Xenopus laevis AAO33927 N 0.732
AAI70311 Xenopus laevis AAI70311 I 0.718
AAI70309 Xenopus laevis AAI70309 I 0.718
AAH73657 Xenopus laevis AAH73657 I 0.704
AAH45063 Xenopus laevis AAH45063 I 0.704
AAG36902 Xenopus laevis AAG36902 I 0.704
2JWN_B Xenopus laevis 2JWN_B I 0.718
2JWN_A Xenopus laevis 2JWN_A I 0.718
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.718