HNRPDL (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000016217 T40743_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.714
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000027864 RRM 31 100
ENSPTRP00000027864 RRM 116 185
ENSPTRP00000027865 RRM 150 219
ENSPTRP00000027865 RRM 235 304

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.721
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.720
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 1.000
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.720
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.721
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 1.000
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.714
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.725
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.700
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.720
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 1.000
HNRPDL Callithrix jacchus ENSCJAG00000004101 N 0.836
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.725
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.986
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.714
ENSCAFG00000005858 Canis familiaris ENSCAFG00000005858 N 0.943
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.725
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 1.000
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.714
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 1.000
ENSCHOG00000003275 Choloepus hoffmanni ENSCHOG00000003275 N 0.950
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.713
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 1.000
ENSCHOG00000002938 Choloepus hoffmanni ENSCHOG00000002938 N 0.964
ENSCHOG00000009204 Choloepus hoffmanni ENSCHOG00000009204 N 0.879
ENSCHOG00000010831 Choloepus hoffmanni ENSCHOG00000010831 N 0.971
hnrpdl Danio rerio ENSDARG00000003429 N 0.857
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.714
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 1.000
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.713
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 1.000
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.725
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.714
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 1.000
LOC100060733 Equus caballus ENSECAG00000009344 I 0.725
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.716
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.986
HNRPDL Felis catus ENSFCAG00000000455 N 0.950
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.727
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.700
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.993
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.714
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.714
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.725
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.714
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 1.000
HNRPDL Homo sapiens ENSG00000152795 I 1.000
HNRNPD Homo sapiens ENSG00000138668 I 0.725
HNRNPAB Homo sapiens ENSG00000197451 D 0.714
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.720
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 1.000
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.714
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.725
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.721
HNRPDL Macaca mulatta ENSMMUG00000015777 I 1.000
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.993
HNRPDL Macropus eugenii ENSMEUG00000010033 N 0.838
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.707
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.727
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.993
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.700
HNRPDL Microcebus murinus ENSMICG00000001445 I 1.000
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.720
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.993
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.725
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.964
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.707
Hnrpdl Mus musculus ENSMUSG00000029328 I 1.000
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.725
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.711
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.986
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.725
HNRPDL Ochotona princeps ENSOPRG00000007178 I 1.000
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.714
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.707
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.727
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 1.000
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 1.000
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.720
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.711
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.736
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.702
HNRPDL Otolemur garnettii ENSOGAG00000002501 N 0.964
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.714
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.725
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.702
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 1.000
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.725
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.707
HNRPDL Procavia capensis ENSPCAG00000011543 I 1.000
HNRPDL Pteropus vampyrus ENSPVAG00000006816 N 0.829
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.725
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 1.000
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.718
HNRNPD Sorex araneus ENSSARG00000006883 I 0.716
HNRPDL Sorex araneus ENSSARG00000009961 N 0.736
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 1.000
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.725
ENSSSCG00000012473 Sus scrofa ENSSSCG00000012473 N 0.707
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.700
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.993
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.725
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.729
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.720
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.709
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.714
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 1.000
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.725
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.993
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.720
AAH68788 Xenopus laevis AAH68788 N 0.914
ABV54637 Xenopus laevis ABV54637 I 0.714
AAU25946 Xenopus laevis AAU25946 I 0.704
AAH97855 Xenopus laevis AAH97855 I 0.704
CBU92545 Xenopus laevis CBU92545 N 0.914
Q6NU14 Xenopus laevis Q6NU14 N 0.914
AAH45124 Xenopus laevis AAH45124 N 0.900
AAH43814 Xenopus laevis AAH43814 I 0.714
AAH74212 Xenopus laevis AAH74212 I 0.714
Q7ZX83 Xenopus laevis Q7ZX83 N 0.900
CBF67671 Xenopus laevis CBF67671 N 0.914
hnrpdl Xenopus tropicalis ENSXETG00000023026 I 0.921
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.729
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.725