CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF5
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000013476
T41503_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.788
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000014323
RRM
1
30
GCAFLTYCARDSAIKAQTALHEQKTLPGMA
ENSSSCP00000014323
RRM
49
118
LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
ENSSSCP00000014323
RRM
316
386
LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh2_pg.C_sca_43000080
Lottia gigantea
fgenesh2_pg.C_sca_43000080
N
0.000
PGTG_13387
Puccinia graminis
PGTG_13387
N
0.000
Genemark.469_g
Serpula lacrymans
Genemark.469_g
N
0.000
Genemark.4804_g
Serpula lacrymans
Genemark.4804_g
N
0.000
Genemark.6054_g
Serpula lacrymans
Genemark.6054_g
N
0.000
Genemark.6548_g
Serpula lacrymans
Genemark.6548_g
N
0.000
Genemark.697_g
Serpula lacrymans
Genemark.697_g
N
0.000
Genemark.7257_g
Serpula lacrymans
Genemark.7257_g
N
0.000
Genemark.7317_g
Serpula lacrymans
Genemark.7317_g
N
0.000
Genemark.75_g
Serpula lacrymans
Genemark.75_g
N
0.000
Genemark.826_g
Serpula lacrymans
Genemark.826_g
N
0.000
Genemark.3014_g
Serpula lacrymans
Genemark.3014_g
N
0.000
Genemark.291_g
Serpula lacrymans
Genemark.291_g
N
0.000
Genemark.1711_g
Serpula lacrymans
Genemark.1711_g
N
0.000
Genemark.10431_g
Serpula lacrymans
Genemark.10431_g
N
0.000
Genemark.10526_g
Serpula lacrymans
Genemark.10526_g
N
0.000
Genemark.10975_g
Serpula lacrymans
Genemark.10975_g
N
0.000
Genemark.10994_g
Serpula lacrymans
Genemark.10994_g
N
0.000
Genemark.114_g
Serpula lacrymans
Genemark.114_g
N
0.000
Genemark.11813_g
Serpula lacrymans
Genemark.11813_g
N
0.000
Genemark.12031_g
Serpula lacrymans
Genemark.12031_g
N
0.000
Genemark.12199_g
Serpula lacrymans
Genemark.12199_g
N
0.000
Genemark.12634_g
Serpula lacrymans
Genemark.12634_g
N
0.000
Genemark.983_g
Serpula lacrymans
Genemark.983_g
N
0.000