CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF1
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000001711
T42203_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000003924
RRM
45
115
MFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGM
ENSTRUP00000003924
RRM
142
210
LFIGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCS
ENSTRUP00000003924
RRM
420
490
LFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
ENSTRUP00000003925
RRM
36
106
MFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGM
ENSTRUP00000003925
RRM
128
196
LFIGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCS
ENSTRUP00000003925
RRM
415
485
LFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
ENSTRUP00000003926
RRM
7
77
MFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGM
ENSTRUP00000003926
RRM
102
170
LFIGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCS
ENSTRUP00000003926
RRM
356
378
LFIYHLPQEFGDQDLLQMFMPFG
ENSTRUP00000003926
RRM
374
406
FMPFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
ENSTRUP00000003927
RRM
7
77
MFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGM
ENSTRUP00000003927
RRM
102
170
LFIGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCS
ENSTRUP00000003927
RRM
347
385
PTLRVSVSPPGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R012775
Ailuropoda melanoleuca
Ame_R012775
N
0.000
ZC3H6
Bos taurus
ENSBTAG00000020646
N
0.000
ZC3H6
Callithrix jacchus
ENSCJAG00000016479
N
0.000
ZC3H6
Canis familiaris
ENSCAFG00000007160
N
0.000
ZC3H6
Dasypus novemcinctus
ENSDNOG00000000253
N
0.000
Zc3h6
Dipodomys ordii
ENSDORG00000013967
N
0.000
ZC3H6
Gorilla gorilla
ENSGGOG00000001665
N
0.000
ZC3H6
Homo sapiens
ENSG00000188177
N
0.000
ZC3H6
Loxodonta africana
ENSLAFG00000001151
N
0.000
ZC3H6
Macaca mulatta
ENSMMUG00000016430
N
0.000
ZC3H6
Myotis lucifugus
ENSMLUG00000004896
N
0.000
ZC3H6
Ochotona princeps
ENSOPRG00000012717
N
0.000
ZC3H6
Oryctolagus cuniculus
ENSOCUG00000011125
N
0.000
ZC3H6
Otolemur garnettii
ENSOGAG00000002556
N
0.000
ZC3H6
Pan troglodytes
ENSPTRG00000012363
N
0.000
ZC3H6
Pteropus vampyrus
ENSPVAG00000013728
N
0.000
ZC3H6
Spermophilus tridecemlineatus
ENSSTOG00000008120
N
0.000
ZC3H6
Sus scrofa
ENSSSCG00000008096
N
0.000
ZC3H6
Tarsius syrichta
ENSTSYG00000006672
N
0.000
ZC3H6
Tupaia belangeri
ENSTBEG00000016232
N
0.000
ZC3H6
Tursiops truncatus
ENSTTRG00000013154
N
0.000
ZC3H6
Vicugna pacos
ENSVPAG00000005912
N
0.000