cassava43930.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava43930.valid.m1 T04809_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava43930.valid.m1 CCCH ZF 48 74
cassava43930.valid.m1 CCCH ZF 94 120
cassava43930.valid.m1 CCCH ZF 140 166
cassava43930.valid.m1 CCCH ZF 306 332
cassava43930.valid.m1 CCCH ZF 352 378

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.941
29726.m004014 Ricinus communis 29726.m004014 N 0.926
ppa005056m Prunus persica ppa005056m N 0.874
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.867
MDP0000319251 Malus x domestica MDP0000319251 N 0.867
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.867
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.859
PK29685.1 Cannabis sativa PK29685.1 N 0.859
MDP0000535412 Malus x domestica MDP0000535412 N 0.859
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.859
mgf002685m Mimulus guttatus mgf002685m N 0.837
mgf008934m Mimulus guttatus mgf008934m N 0.837
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.785
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.778
mgf026218m Mimulus guttatus mgf026218m N 0.778
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.778
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.770
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.770
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.748
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.741
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.741
ppa005229m Prunus persica ppa005229m N 0.741
MDP0000207283 Malus x domestica MDP0000207283 N 0.741
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.733
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.733
SB03G009930 Sorghum bicolor Sb03g009930 N 0.733
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.726
29647.m002009 Ricinus communis 29647.m002009 N 0.726
30128.m009030 Ricinus communis 30128.m009030 N 0.726
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.726
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.726
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.719
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.719
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.719
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.719
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.719
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.711
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.711
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.711
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.704
ppa005813m Prunus persica ppa005813m N 0.704
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.704
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.704
mgf004851m Mimulus guttatus mgf004851m N 0.704
mgf001793m Mimulus guttatus mgf001793m N 0.704
mgf010716m Mimulus guttatus mgf010716m N 0.704