MDP0000319251 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000319251 T06368_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000319251 CCCH ZF 47 73
MDP0000319251 CCCH ZF 94 119
MDP0000319251 CCCH ZF 139 165
MDP0000319251 CCCH ZF 301 327
MDP0000319251 CCCH ZF 347 373

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000535412 Malus x domestica MDP0000535412 N 0.963
ppa005056m Prunus persica ppa005056m N 0.940
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.896
29726.m004014 Ricinus communis 29726.m004014 N 0.888
PK29685.1 Cannabis sativa PK29685.1 N 0.873
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.867
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.858
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.858
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.851
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.836
mgf008934m Mimulus guttatus mgf008934m N 0.815
mgf002685m Mimulus guttatus mgf002685m N 0.806
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.785
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.785
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.778
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.778
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.778
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.770
ppa005229m Prunus persica ppa005229m N 0.769
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.761
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.761
SB03G009930 Sorghum bicolor Sb03g009930 N 0.756
29647.m002009 Ricinus communis 29647.m002009 N 0.754
mgf026218m Mimulus guttatus mgf026218m N 0.754
MDP0000207283 Malus x domestica MDP0000207283 N 0.754
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.754
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.748
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.746
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.746
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.733
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.733
mgf004851m Mimulus guttatus mgf004851m N 0.731
mgf001793m Mimulus guttatus mgf001793m N 0.731
mgf010716m Mimulus guttatus mgf010716m N 0.731
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.726
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.716
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.716
30128.m009030 Ricinus communis 30128.m009030 N 0.716
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.716
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.709
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.704