Glyma17g02720.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma17g02720.1 T05460_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma17g02720.1 CCCH ZF 48 74
Glyma17g02720.1 CCCH ZF 95 120
Glyma17g02720.1 CCCH ZF 141 166
Glyma17g02720.1 CCCH ZF 306 332
Glyma17g02720.1 CCCH ZF 352 378

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.940
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.895
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.881
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.859
29726.m004014 Ricinus communis 29726.m004014 N 0.858
MDP0000319251 Malus x domestica MDP0000319251 N 0.836
ppa005056m Prunus persica ppa005056m N 0.836
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.828
MDP0000535412 Malus x domestica MDP0000535412 N 0.813
PK29685.1 Cannabis sativa PK29685.1 N 0.799
mgf002685m Mimulus guttatus mgf002685m N 0.776
mgf008934m Mimulus guttatus mgf008934m N 0.770
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.763
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.756
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.756
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.748
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.733
mgf026218m Mimulus guttatus mgf026218m N 0.716
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.711
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.711
ppa005229m Prunus persica ppa005229m N 0.709
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.709
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.704
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.704
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.701
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.701
MDP0000207283 Malus x domestica MDP0000207283 N 0.701