CpipJ_CPIJ000395 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ000395 T28863_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.839
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.728
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.728
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.728
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.719
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.719
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ000395-RA RRM 46 116
CpipJ_CPIJ000395-RA RRM 132 213
CpipJ_CPIJ000395-RA RRM 284 354

Links

Other RRM family RBPs
Other Culex pipiens RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 1.000
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.879
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.875
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.848
GK14865 Drosophila willistoni FBgn0216870 I 0.848
GJ13991 Drosophila virilis FBgn0201209 I 0.844
GM18380 Drosophila sechellia FBgn0173287 I 0.844
GG24901 Drosophila erecta FBgn0117030 I 0.844
GF14992 Drosophila ananassae FBgn0092017 I 0.844
GI11879 Drosophila mojavensis FBgn0134637 I 0.844
GL26299 Drosophila persimilis FBgn0163881 I 0.844
GE18193 Drosophila yakuba FBgn0235624 I 0.844
Rbp9 Drosophila melanogaster FBgn0010263 D 0.839
GH13638 Drosophila grimshawi FBgn0121114 I 0.839
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.831
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.831
AGAP000965 Anopheles gambiae AGAP000965 I 0.830
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.790
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.768
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.751
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.751
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.728
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.728
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.728
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.728
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.728
Elavl4 Mus musculus ENSMUSG00000028546 I 0.728
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.728
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.728
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.728
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.728
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.728
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.728
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.728
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.728
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.728
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.728
elavl4 Danio rerio ENSDARG00000045639 I 0.728
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.728
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.728
LOC100051268 Equus caballus ENSECAG00000022284 I 0.728
elavl2 Danio rerio ENSDARG00000040732 I 0.728
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.728
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.728
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.728
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.728
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.728
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.728
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.728
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.728
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.728
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.728
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.728
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.728
ELAVL4 Homo sapiens ENSG00000162374 D 0.728
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.724
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.723
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.723
AAH99348 Xenopus laevis AAH99348 I 0.723
CBF67567 Xenopus laevis CBF67567 I 0.723
CBU92440 Xenopus laevis CBU92440 I 0.723
AAA96945 Xenopus laevis AAA96945 I 0.723
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.723
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.723
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.723
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.720
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.720
elavl3 Danio rerio ENSDARG00000014420 I 0.720
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.719
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.719
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.719
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.719
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.719
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.719
AAH94189 Xenopus laevis AAH94189 I 0.719
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.719
ELAVL2 Homo sapiens ENSG00000107105 D 0.719
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.719
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.719
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.719
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.719
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.719
ELAVL2 Equus caballus ENSECAG00000020142 I 0.719
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.719
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.719
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.719
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.719
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.719
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.719
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.719
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.719
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.719
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.719
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.719
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.719
Elavl2 Mus musculus ENSMUSG00000008489 I 0.719
AAI70539 Xenopus laevis AAI70539 I 0.719
Q91903 Xenopus laevis Q91903 I 0.716
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.716
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.716
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.716
AAA96943 Xenopus laevis AAA96943 I 0.716
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.714
CAA59430 Xenopus laevis CAA59430 I 0.711
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.710
187316 Helobdella robusta 187316 N 0.705
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.702
AAI69769 Xenopus laevis AAI69769 I 0.702
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.702
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.702
Q91584 Xenopus laevis Q91584 I 0.702
AAA96944 Xenopus laevis AAA96944 I 0.702
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.702
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.702
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.702
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.702
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.702
Elavl3 Mus musculus ENSMUSG00000003410 I 0.702
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.702
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.702
ELAVL3 Homo sapiens ENSG00000196361 I 0.702
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.702
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.702
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.702
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.701