fgenesh1_pg.C_scaffold_8000205 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_8000205 T51951_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.792
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.751
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.751
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.751
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.742
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.742
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.742
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_8000205 RRM 1 62
fgenesh1_pg.C_scaffold_8000205 RRM 78 147
fgenesh1_pg.C_scaffold_8000205 RRM 249 319

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.844
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.840
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.808
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.808
AGAP000965 Anopheles gambiae AGAP000965 I 0.807
Rbp9 Drosophila melanogaster FBgn0010263 D 0.802
GH13638 Drosophila grimshawi FBgn0121114 I 0.802
GL26299 Drosophila persimilis FBgn0163881 I 0.797
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.797
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.790
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.790
GJ13991 Drosophila virilis FBgn0201209 I 0.787
GM18380 Drosophila sechellia FBgn0173287 I 0.787
GE18193 Drosophila yakuba FBgn0235624 I 0.787
GG24901 Drosophila erecta FBgn0117030 I 0.787
GI11879 Drosophila mojavensis FBgn0134637 I 0.787
GF14992 Drosophila ananassae FBgn0092017 I 0.782
GK14865 Drosophila willistoni FBgn0216870 I 0.782
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.782
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.751
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.751
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.751
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.751
LOC100051268 Equus caballus ENSECAG00000022284 I 0.751
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.751
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.751
Elavl4 Mus musculus ENSMUSG00000028546 I 0.751
ELAVL4 Homo sapiens ENSG00000162374 D 0.751
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.751
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.751
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.751
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.751
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.751
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.751
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.751
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.751
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.751
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.751
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.751
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.751
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.751
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.751
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.751
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.751
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.751
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.751
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.751
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.751
elavl2 Danio rerio ENSDARG00000040732 I 0.751
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.751
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.751
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.751
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.751
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.748
elavl4 Danio rerio ENSDARG00000045639 I 0.748
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.746
CBU92440 Xenopus laevis CBU92440 I 0.746
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.746
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.746
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.746
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.746
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.746
CBF67567 Xenopus laevis CBF67567 I 0.746
AAA96945 Xenopus laevis AAA96945 I 0.746
AAH99348 Xenopus laevis AAH99348 I 0.746
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.745
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.742
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.742
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.742
AAH94189 Xenopus laevis AAH94189 I 0.742
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.742
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.742
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.742
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.742
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.742
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.742
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.742
AAI70539 Xenopus laevis AAI70539 I 0.742
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.742
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.742
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.742
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.742
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.742
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.742
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.742
ELAVL2 Homo sapiens ENSG00000107105 D 0.742
ELAVL2 Equus caballus ENSECAG00000020142 I 0.742
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.742
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.742
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.742
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.742
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.742
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.742
Elavl2 Mus musculus ENSMUSG00000008489 I 0.742
AAA96943 Xenopus laevis AAA96943 I 0.738
Q91903 Xenopus laevis Q91903 I 0.738
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.737
ISCW010302 Ixodes scapularis ISCW010302 N 0.734
CAA59430 Xenopus laevis CAA59430 I 0.734
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.732
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.728
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.725
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.720
elavl3 Danio rerio ENSDARG00000014420 I 0.718
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.718
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.718
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.718
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.716
ELAVL3 Homo sapiens ENSG00000196361 I 0.714
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.714
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.714
Elavl3 Mus musculus ENSMUSG00000003410 I 0.714
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.714
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.714
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.714
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.714
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.714
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.714
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.714
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.714
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.710
Q91584 Xenopus laevis Q91584 I 0.710
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.710
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.710
AAI69769 Xenopus laevis AAI69769 I 0.710
AAA96944 Xenopus laevis AAA96944 I 0.710
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.709
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.704