fgenesh2_pg.scaffold_219000066 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_219000066 T52236_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.784
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.784
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.784
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.779
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.779
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.779
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.774
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.726
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.726
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.726
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.726
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.726
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.726
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_219000066 RRM 29 99
fgenesh2_pg.scaffold_219000066 RRM 115 184
fgenesh2_pg.scaffold_219000066 RRM 249 319

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

167 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.835
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.830
AGAP000965 Anopheles gambiae AGAP000965 I 0.807
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.798
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.798
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.798
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.797
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.793
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.793
elavl2 Danio rerio ENSDARG00000040732 I 0.793
Rbp9 Drosophila melanogaster FBgn0010263 D 0.792
GH13638 Drosophila grimshawi FBgn0121114 I 0.788
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.788
GL26299 Drosophila persimilis FBgn0163881 I 0.788
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.784
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.784
ELAVL2 Homo sapiens ENSG00000107105 D 0.784
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.784
Elavl2 Mus musculus ENSMUSG00000008489 I 0.784
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.784
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.784
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.784
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.784
ELAVL2 Equus caballus ENSECAG00000020142 I 0.784
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.784
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.784
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.784
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.784
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.784
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.784
AAI70539 Xenopus laevis AAI70539 I 0.784
AAH94189 Xenopus laevis AAH94189 I 0.784
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.784
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.784
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.784
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.784
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.784
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.784
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.784
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.784
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.784
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.784
AAA96943 Xenopus laevis AAA96943 I 0.780
Q91903 Xenopus laevis Q91903 I 0.780
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.779
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.779
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.779
ELAVL4 Homo sapiens ENSG00000162374 D 0.779
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.779
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.779
Elavl4 Mus musculus ENSMUSG00000028546 I 0.779
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.779
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.779
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.779
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.779
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.779
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.779
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.779
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.779
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.779
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.779
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.779
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.779
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.779
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.779
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.779
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.779
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.779
AAH99348 Xenopus laevis AAH99348 I 0.779
AAA96945 Xenopus laevis AAA96945 I 0.779
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.779
CBF67567 Xenopus laevis CBF67567 I 0.779
CBU92440 Xenopus laevis CBU92440 I 0.779
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.779
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.779
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.779
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.779
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.779
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.779
LOC100051268 Equus caballus ENSECAG00000022284 I 0.779
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.779
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.779
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.779
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.779
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.779
elavl4 Danio rerio ENSDARG00000045639 I 0.777
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.776
CAA59430 Xenopus laevis CAA59430 I 0.776
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.775
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.775
elavl3 Danio rerio ENSDARG00000014420 I 0.775
GM18380 Drosophila sechellia FBgn0173287 I 0.770
GI11879 Drosophila mojavensis FBgn0134637 I 0.770
GG24901 Drosophila erecta FBgn0117030 I 0.770
GJ13991 Drosophila virilis FBgn0201209 I 0.770
GK14865 Drosophila willistoni FBgn0216870 I 0.770
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.770
GE18193 Drosophila yakuba FBgn0235624 I 0.770
GF14992 Drosophila ananassae FBgn0092017 I 0.770
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.767
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.765
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.765
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.765
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.765
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.765
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.765
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.765
ELAVL3 Homo sapiens ENSG00000196361 I 0.765
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.765
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.765
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.765
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.764
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.761
Elavl3 Mus musculus ENSMUSG00000003410 I 0.761
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.761
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.759
Q91584 Xenopus laevis Q91584 I 0.757
AAA96944 Xenopus laevis AAA96944 I 0.757
AAI69769 Xenopus laevis AAI69769 I 0.757
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.757
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.753
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.752
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.751
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.751
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.751
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.751
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.742
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.741
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.732
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.731
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.728
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.726
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.726
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.726
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.726
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.726
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.726
ELAVL1 Homo sapiens ENSG00000066044 D 0.726
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.726
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.726
ELAVL1 Felis catus ENSFCAG00000014947 I 0.726
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.726
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.726
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.726
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.726
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.726
LOC100060819 Equus caballus ENSECAG00000019459 I 0.722
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.722
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.722
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.722
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.722
elavl1 Danio rerio ENSDARG00000038695 I 0.718
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.718
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.717
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.717
AAA96942 Xenopus laevis AAA96942 I 0.717
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.717
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.717
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.717
Elavl1 Mus musculus ENSMUSG00000040028 I 0.717
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.717
AAH86269 Xenopus laevis AAH86269 I 0.712
Q5U259 Xenopus laevis Q5U259 I 0.712
hug Danio rerio ENSDARG00000016405 I 0.709
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.704
185541 Helobdella robusta 185541 I 0.703
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.701