ISCW014220 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW014220 T44862_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW014220-PA RRM 6 67
ISCW014220-PA RRM 120 185

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.767
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.752
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.752
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.752
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.752
ISCW010321 Ixodes scapularis ISCW010321 I 0.744
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.744
GF17608 Drosophila ananassae FBgn0094626 I 0.744
B52 Drosophila melanogaster FBgn0004587 D 0.744
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.744
GK13948 Drosophila willistoni FBgn0215954 I 0.744
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.744
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.736
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.736
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.736
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.736
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.736
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.736
SRSF4 Homo sapiens ENSG00000116350 I 0.736
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.736
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.736
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.736
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.736
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.736
Srsf4 Mus musculus ENSMUSG00000028911 I 0.736
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.736
GL23543 Drosophila persimilis FBgn0161133 I 0.736
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.736
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.736
GJ24113 Drosophila virilis FBgn0211197 I 0.736
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.736
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.736
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.736
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.736
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.736
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.736
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.736
GH18528 Drosophila grimshawi FBgn0125995 I 0.736
GI22065 Drosophila mojavensis FBgn0144794 I 0.736
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.729
srsf5a Danio rerio ENSDARG00000029818 I 0.729
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.729
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.729
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.729
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.721
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.721
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.721
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.721
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 0.721
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
AAH71160 Xenopus laevis AAH71160 I 0.721
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.721
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.721
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.721
srsf6a Danio rerio ENSDARG00000013729 I 0.721
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.721
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.721
SRSF6 Homo sapiens ENSG00000124193 I 0.721
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.721
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.713
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.713
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.713
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.713
PHUM290500 Pediculus humanus PHUM290500 I 0.713
srsf6b Danio rerio ENSDARG00000016783 I 0.713
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.713
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.713
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.713
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.713
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.713
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.713
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.713
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.713
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.713
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
AAH44085 Xenopus laevis AAH44085 I 0.705
AAH46668 Xenopus laevis AAH46668 I 0.705
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.705
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.705
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.705
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.705
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.705
Srsf6 Mus musculus ENSMUSG00000016921 I 0.705
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.705
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.705