Medtr1g024150 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr1g024150 T54425_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g024150.1 RRM 34 104
Medtr1g024150.1 RRM 122 191
Medtr1g024150.1 RRM 213 282
Medtr1g024150.1 RRM 317 386

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.851
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.840
30170.m013847 Ricinus communis 30170.m013847 N 0.840
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.833
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.829
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.829
ppa002620m Prunus persica ppa002620m N 0.826
ppa002618m Prunus persica ppa002618m N 0.826
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.826
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.822
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.822
29801.m003152 Ricinus communis 29801.m003152 N 0.815
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.815
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.808
MDP0000253709 Malus x domestica MDP0000253709 N 0.808
MDP0000156895 Malus x domestica MDP0000156895 N 0.808
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.804
mgf004973m Mimulus guttatus mgf004973m N 0.804
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.801
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.801
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.797
MDP0000497543 Malus x domestica MDP0000497543 N 0.797
mgf009542m Mimulus guttatus mgf009542m N 0.797
MDP0000283985 Malus x domestica MDP0000283985 N 0.797
ppa002607m Prunus persica ppa002607m N 0.797
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.794
PK02172.1 Cannabis sativa PK02172.1 N 0.794
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.790
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.790
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.779
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.769
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.769
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.765
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.762
PK00659.1 Cannabis sativa PK00659.1 N 0.754
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.751
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.751
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.748
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.748
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.747
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.747
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.740
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.740
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.733
SB06G021850 Sorghum bicolor Sb06g021850 N 0.733
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.730
mgf005294m Mimulus guttatus mgf005294m N 0.730
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.726
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.726
mgf004596m Mimulus guttatus mgf004596m N 0.722
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.719
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.719
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.719
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.719
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.719
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.716
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.715
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.715
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.705
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.705
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.701
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.701
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.701