LOC_Os08g22354 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os08g22354 T45103_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g22354.1 RRM 41 111
LOC_Os08g22354.1 RRM 129 198
LOC_Os08g22354.1 RRM 220 289
LOC_Os08g22354.1 RRM 323 393
LOC_Os08g22354.2 RRM 26 96
LOC_Os08g22354.2 RRM 114 183
LOC_Os08g22354.2 RRM 205 274
LOC_Os08g22354.2 RRM 308 378

Links

Other RRM family RBPs
Other Oryza sativa RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 1.000
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.901
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.872
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.872
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.840
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.801
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.791
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.780
ppa002607m Prunus persica ppa002607m N 0.777
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.773
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.770
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.770
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.770
30170.m013847 Ricinus communis 30170.m013847 N 0.770
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.770
PK02172.1 Cannabis sativa PK02172.1 N 0.766
mgf009542m Mimulus guttatus mgf009542m N 0.766
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.766
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.766
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.759
ppa002618m Prunus persica ppa002618m N 0.755
ppa002620m Prunus persica ppa002620m N 0.755
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.755
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.755
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.755
29801.m003152 Ricinus communis 29801.m003152 N 0.755
MDP0000156895 Malus x domestica MDP0000156895 N 0.752
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.752
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.752
MDP0000253709 Malus x domestica MDP0000253709 N 0.752
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.752
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.752
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.748
MDP0000497543 Malus x domestica MDP0000497543 N 0.748
mgf004973m Mimulus guttatus mgf004973m N 0.748
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.745
PK00659.1 Cannabis sativa PK00659.1 N 0.741
MDP0000283985 Malus x domestica MDP0000283985 N 0.734
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.734
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.727
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.727
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.727
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.727
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.723
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.723
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.723
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.723
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.716
SB06G021850 Sorghum bicolor Sb06g021850 N 0.716
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.716
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.713
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.713
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.709
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.706
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.706
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.702
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.702
mgf005294m Mimulus guttatus mgf005294m N 0.702
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.702