mgf009542m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf009542m T53669_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf009542m RRM 35 105
mgf009542m RRM 123 192
mgf009542m RRM 214 283
mgf009542m RRM 317 386

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf004973m Mimulus guttatus mgf004973m N 0.907
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.858
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.858
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.847
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.840
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.836
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.836
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.836
30170.m013847 Ricinus communis 30170.m013847 N 0.833
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.833
PK02172.1 Cannabis sativa PK02172.1 N 0.829
ppa002618m Prunus persica ppa002618m N 0.829
ppa002620m Prunus persica ppa002620m N 0.829
29801.m003152 Ricinus communis 29801.m003152 N 0.826
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.826
ppa002607m Prunus persica ppa002607m N 0.826
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.822
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.819
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.819
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.815
MDP0000283985 Malus x domestica MDP0000283985 N 0.811
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.808
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.804
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.801
MDP0000497543 Malus x domestica MDP0000497543 N 0.801
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.797
MDP0000253709 Malus x domestica MDP0000253709 N 0.794
MDP0000156895 Malus x domestica MDP0000156895 N 0.794
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.783
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.769
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.766
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.766
PK00659.1 Cannabis sativa PK00659.1 N 0.765
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.758
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.758
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.758
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.751
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.751
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.751
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.747
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.747
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.747
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.744
mgf005294m Mimulus guttatus mgf005294m N 0.744
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.744
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.737
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.737
mgf004596m Mimulus guttatus mgf004596m N 0.737
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.734
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.733
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.733
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.733
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.733
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.733
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.733
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.722
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.719
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.719
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.719
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.719
SB06G021850 Sorghum bicolor Sb06g021850 N 0.715
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.705
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.705