B9GNU4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s02550 T45645_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s02550.1 RRM 33 103
POPTR_0014s02550.1 RRM 121 190
POPTR_0014s02550.1 RRM 212 281
POPTR_0014s02550.1 RRM 315 384

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.929
30170.m013847 Ricinus communis 30170.m013847 N 0.893
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.879
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.865
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.861
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.858
mgf004973m Mimulus guttatus mgf004973m N 0.858
mgf009542m Mimulus guttatus mgf009542m N 0.858
ppa002607m Prunus persica ppa002607m N 0.854
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.854
ppa002618m Prunus persica ppa002618m N 0.854
ppa002620m Prunus persica ppa002620m N 0.854
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.847
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.847
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.840
29801.m003152 Ricinus communis 29801.m003152 N 0.840
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.836
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.833
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.833
MDP0000497543 Malus x domestica MDP0000497543 N 0.833
MDP0000283985 Malus x domestica MDP0000283985 N 0.829
MDP0000156895 Malus x domestica MDP0000156895 N 0.826
MDP0000253709 Malus x domestica MDP0000253709 N 0.826
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.826
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.822
PK02172.1 Cannabis sativa PK02172.1 N 0.819
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.808
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.808
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.801
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.790
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.779
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.769
mgf005294m Mimulus guttatus mgf005294m N 0.769
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.765
PK00659.1 Cannabis sativa PK00659.1 N 0.762
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.762
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.755
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.755
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.754
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.754
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.754
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.751
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.751
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.747
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.747
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.744
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.744
mgf004596m Mimulus guttatus mgf004596m N 0.744
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.744
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.740
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.740
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.740
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.737
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.737
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.733
SB06G021850 Sorghum bicolor Sb06g021850 N 0.730
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.719
MDP0000212007 Malus x domestica MDP0000212007 N 0.719
MDP0000286821 Malus x domestica MDP0000286821 N 0.715
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.712
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.709
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.705
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.705
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.705
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.705
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.705
ppa002584m Prunus persica ppa002584m N 0.701