e_gw1.7.538.1 (Trichoplax adhaerens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.7.538.1 T50112_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.711
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.711
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.711
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.7.538.1 RRM 21 91
e_gw1.7.538.1 RRM 109 178
e_gw1.7.538.1 RRM 202 271
e_gw1.7.538.1 RRM 305 374

Links

Other RRM family RBPs
Other Trichoplax adhaerens RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.716
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.716
PABPC1 Homo sapiens ENSG00000070756 D 0.715
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.715
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.715
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.715
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.715
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.715
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.715
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.715
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.715
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.715
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.715
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.715
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.715
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.715
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.712
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.711
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.711
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.711
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.711
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.711
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.711
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.711
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.711
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.711
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.711
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.708
Gm10110 Mus musculus ENSMUSG00000062093 I 0.708
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.708
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.708
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.708
LOC100054235 Equus caballus ENSECAG00000009396 I 0.708
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.708
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.708
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.708
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.708
pabpc4 Danio rerio ENSDARG00000059259 I 0.708
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.708
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.708
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.708
PHUM617090 Pediculus humanus PHUM617090 I 0.706
ISCW014211 Ixodes scapularis ISCW014211 I 0.705
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.704
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.704
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.704
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.704
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.704
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.704
PABPC4 Homo sapiens ENSG00000090621 D 0.704
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.704
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.704
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.704
pabpc1b Danio rerio ENSDARG00000021140 I 0.702
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.701
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.701
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.701
AAH72110 Xenopus laevis AAH72110 I 0.701
PABPC4 Gallus gallus ENSGALG00000003800 I 0.701
Q6IP09 Xenopus laevis Q6IP09 I 0.701
AAI08463 Xenopus laevis AAI08463 I 0.701
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.701
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.701