ENSGACG00000003771 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000003771 T37415_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.918
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.918
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.918
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.853
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.832
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000004964 RRM 4 74
ENSGACP00000004964 RRM 92 160
ENSGACP00000004964 RRM 184 253
ENSGACP00000004964 RRM 287 367
ENSGACP00000004980 RRM 13 83
ENSGACP00000004980 RRM 101 169
ENSGACP00000004980 RRM 193 262
ENSGACP00000004980 RRM 296 364
ENSGACP00000004990 RRM 13 83
ENSGACP00000004990 RRM 101 169
ENSGACP00000004990 RRM 193 262
ENSGACP00000004990 RRM 296 372

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

166 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.957
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.957
pabpc1b Danio rerio ENSDARG00000021140 I 0.946
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.928
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.921
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.918
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.918
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.918
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.918
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.918
PABPC1 Homo sapiens ENSG00000070756 D 0.918
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.918
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.918
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.918
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.918
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.918
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.918
pabpc1a Danio rerio ENSDARG00000017219 I 0.918
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.918
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.914
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.914
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.914
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.914
AAH72110 Xenopus laevis AAH72110 I 0.914
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.914
Q6IP09 Xenopus laevis Q6IP09 I 0.914
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.914
AAI08463 Xenopus laevis AAI08463 I 0.914
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.914
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.907
AAH52100 Xenopus laevis AAH52100 I 0.907
P20965 Xenopus laevis P20965 I 0.907
CAA40721 Xenopus laevis CAA40721 I 0.907
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.903
AAA60936 Xenopus laevis AAA60936 I 0.903
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.896
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.896
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.892
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.888
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.867
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.867
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.864
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.860
AAH73435 Xenopus laevis AAH73435 I 0.857
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.857
PABPC3 Homo sapiens ENSG00000151846 D 0.853
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.849
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.849
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.849
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.842
PABPC4 Gallus gallus ENSGALG00000003800 I 0.842
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.835
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.835
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.835
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.835
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.835
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.832
PABPC1L Gallus gallus ENSGALG00000004123 I 0.832
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.832
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.832
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.832
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.832
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.832
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.832
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.832
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.832
LOC100054235 Equus caballus ENSECAG00000009396 I 0.832
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.832
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.832
PABPC4 Homo sapiens ENSG00000090621 D 0.832
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.832
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.832
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.828
pabpc4 Danio rerio ENSDARG00000059259 I 0.828
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.828
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.824
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.824
Gm10110 Mus musculus ENSMUSG00000062093 I 0.824
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.821
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.821
AAH80020 Xenopus laevis AAH80020 I 0.821
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.821
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.821
AAK29408 Xenopus laevis AAK29408 I 0.821
Q98SP8 Xenopus laevis Q98SP8 I 0.821
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.814
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.810
Q6GR16 Xenopus laevis Q6GR16 I 0.810
AAH71118 Xenopus laevis AAH71118 I 0.810
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.810
pabpc1l Danio rerio ENSDARG00000002597 I 0.806
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.803
LOC100056021 Equus caballus ENSECAG00000020699 I 0.803
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.803
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.799
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.799
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.796
PABPC1L Bos taurus ENSBTAG00000016849 I 0.796
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.796
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.792
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.792
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.789
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.788
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.785
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.785
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.781
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.781
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.781
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.781
LOC100070836 Equus caballus ENSECAG00000022681 I 0.781
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.778
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.778
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.778
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.778
PABPC1L Homo sapiens ENSG00000101104 I 0.778
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.778
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.777
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.774
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.774
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.774
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.774
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.771
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.767
AGAP011092 Anopheles gambiae AGAP011092 I 0.767
PHUM617090 Pediculus humanus PHUM617090 I 0.767
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.763
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.763
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.763
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.763
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.763
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.760
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.756
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.756
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.756
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.753
AAEL010318 Aedes aegypti AAEL010318 I 0.753
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.749
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.746
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.746
ISCW014211 Ixodes scapularis ISCW014211 I 0.743
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.742
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.742
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.742
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.742
185682 Helobdella robusta 185682 I 0.739
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.736
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.731
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.728
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.728
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.721
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.721
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.720
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.718
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.718
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.718
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.713
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.711
GI18654 Drosophila mojavensis FBgn0141393 I 0.711
GK19652 Drosophila willistoni FBgn0221650 I 0.711
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.710
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.708
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.708
GJ21671 Drosophila virilis FBgn0208790 I 0.704
GH21052 Drosophila grimshawi FBgn0128514 I 0.704
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.703