gw.1.65.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw.1.65.1 T53337_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.746
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.746
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.746
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw.1.65.1 RRM 14 84
gw.1.65.1 RRM 102 171
gw.1.65.1 RRM 195 265
gw.1.65.1 RRM 299 367

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 1.000
ISCW014211 Ixodes scapularis ISCW014211 I 0.787
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.772
pabpc4 Danio rerio ENSDARG00000059259 I 0.767
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.765
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.765
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.765
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.763
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.760
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.760
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.760
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.758
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.758
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.758
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.756
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.756
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.756
PABPC4 Gallus gallus ENSGALG00000003800 I 0.756
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.756
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.756
LOC100054235 Equus caballus ENSECAG00000009396 I 0.753
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.753
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.753
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.753
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.753
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.753
PABPC1 Homo sapiens ENSG00000070756 D 0.753
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.753
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.753
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.753
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.753
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.753
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.753
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.753
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.753
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.753
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.753
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.753
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.753
PABPC4 Homo sapiens ENSG00000090621 D 0.753
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.753
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.753
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.753
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.753
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.753
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.753
AAEL010318 Aedes aegypti AAEL010318 I 0.751
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.749
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.749
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.749
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.749
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.749
Gm10110 Mus musculus ENSMUSG00000062093 I 0.749
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.749
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.749
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.749
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.749
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.747
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.747
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.747
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.746
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.746
AAH73435 Xenopus laevis AAH73435 I 0.746
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.746
pabpc1b Danio rerio ENSDARG00000021140 I 0.743
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.742
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.742
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.742
PHUM617090 Pediculus humanus PHUM617090 I 0.740
P20965 Xenopus laevis P20965 I 0.739
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.739
AAH72110 Xenopus laevis AAH72110 I 0.739
AAH52100 Xenopus laevis AAH52100 I 0.739
Q6IP09 Xenopus laevis Q6IP09 I 0.739
AAI08463 Xenopus laevis AAI08463 I 0.739
CAA40721 Xenopus laevis CAA40721 I 0.739
pabpc1a Danio rerio ENSDARG00000017219 I 0.739
AAA60936 Xenopus laevis AAA60936 I 0.735
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.735
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.735
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.734
AGAP011092 Anopheles gambiae AGAP011092 I 0.733
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.733
GI18654 Drosophila mojavensis FBgn0141393 I 0.727
185682 Helobdella robusta 185682 I 0.726
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.724
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.724
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.724
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.724
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.724
GH21052 Drosophila grimshawi FBgn0128514 I 0.723
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.721
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.721
GJ21671 Drosophila virilis FBgn0208790 I 0.720
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.719
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.719
PABPC1L Gallus gallus ENSGALG00000004123 I 0.717
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.717
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.716
GK19652 Drosophila willistoni FBgn0221650 I 0.716
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.714
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.713
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.710
PABPC1L Bos taurus ENSBTAG00000016849 I 0.710
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.709
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.707
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.707
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.707
Q98SP8 Xenopus laevis Q98SP8 I 0.707
AAK29408 Xenopus laevis AAK29408 I 0.707
AAH80020 Xenopus laevis AAH80020 I 0.707
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.707
LOC100070836 Equus caballus ENSECAG00000022681 I 0.707
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.707
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.706
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.706
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.706
GL11548 Drosophila persimilis FBgn0149157 I 0.706
AAH71118 Xenopus laevis AAH71118 I 0.703
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.703
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.703
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.703
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.703
Q6GR16 Xenopus laevis Q6GR16 I 0.703
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.703