fgenesh1_pm.scaffold_278000002 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.scaffold_278000002 T52109_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.736
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.736
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.736
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.scaffold_278000002 RRM 15 85
fgenesh1_pm.scaffold_278000002 RRM 103 172
fgenesh1_pm.scaffold_278000002 RRM 196 265
fgenesh1_pm.scaffold_278000002 RRM 299 368

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.765
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.765
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.746
PABPC4 Gallus gallus ENSGALG00000003800 I 0.743
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.743
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.741
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.741
AAH73435 Xenopus laevis AAH73435 I 0.739
ISCW014211 Ixodes scapularis ISCW014211 I 0.737
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.736
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.736
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.736
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.736
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.736
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.736
pabpc1a Danio rerio ENSDARG00000017219 I 0.736
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.736
AAEL010318 Aedes aegypti AAEL010318 I 0.734
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.732
PABPC1 Homo sapiens ENSG00000070756 D 0.732
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.732
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.732
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.732
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.732
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.732
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.732
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.732
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.732
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.732
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.732
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.732
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.732
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.732
CAA40721 Xenopus laevis CAA40721 I 0.732
AAH52100 Xenopus laevis AAH52100 I 0.732
P20965 Xenopus laevis P20965 I 0.732
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.730
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.730
AGAP011092 Anopheles gambiae AGAP011092 I 0.730
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.730
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.730
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.729
AAA60936 Xenopus laevis AAA60936 I 0.729
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.727
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.727
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.727
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.727
PHUM617090 Pediculus humanus PHUM617090 I 0.727
pabpc1b Danio rerio ENSDARG00000021140 I 0.726
pabpc4 Danio rerio ENSDARG00000059259 I 0.725
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.725
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.725
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.722
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.722
AAI08463 Xenopus laevis AAI08463 I 0.722
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.722
Q6IP09 Xenopus laevis Q6IP09 I 0.722
AAH72110 Xenopus laevis AAH72110 I 0.722
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.722
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.722
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.722
PABPC4 Homo sapiens ENSG00000090621 D 0.722
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.722
LOC100054235 Equus caballus ENSECAG00000009396 I 0.722
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.722
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.722
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.722
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.722
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.722
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.722
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.722
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.722
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.722
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.722
GJ21671 Drosophila virilis FBgn0208790 I 0.720
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.718
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.718
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.718
PABPC1L Gallus gallus ENSGALG00000004123 I 0.718
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.718
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.718
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.718
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.718
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.718
GI18654 Drosophila mojavensis FBgn0141393 I 0.716
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.716
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.715
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.715
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.715
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.715
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.713
GL11548 Drosophila persimilis FBgn0149157 I 0.713
GH21052 Drosophila grimshawi FBgn0128514 I 0.713
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.713
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.713
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.712
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.711
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.711
Gm10110 Mus musculus ENSMUSG00000062093 I 0.711
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.711
GK19652 Drosophila willistoni FBgn0221650 I 0.709
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.708
185682 Helobdella robusta 185682 I 0.706
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.704
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.704
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.704
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.703
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.701