pabpc1b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000021140 T36101_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.932
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.932
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.932
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.868
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.843
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000034822 RRM 13 83
ENSDARP00000034822 RRM 101 169
ENSDARP00000034822 RRM 193 263
ENSDARP00000034822 RRM 297 365
ENSDARP00000040286 RRM 13 83
ENSDARP00000040286 RRM 101 141
ENSDARP00000040286 RRM 127 145
ENSDARP00000040286 RRM 179 207

Links

Other RRM family RBPs
Other Danio rerio RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.950
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.950
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.946
pabpc1a Danio rerio ENSDARG00000017219 I 0.939
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.932
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.932
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.932
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.932
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.932
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.932
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.932
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.932
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.932
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.932
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.932
PABPC1 Homo sapiens ENSG00000070756 D 0.932
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.929
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.929
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.929
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.929
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.929
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.929
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.925
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.925
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.922
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.921
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.921
P20965 Xenopus laevis P20965 I 0.918
CAA40721 Xenopus laevis CAA40721 I 0.918
AAH52100 Xenopus laevis AAH52100 I 0.918
AAA60936 Xenopus laevis AAA60936 I 0.914
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.914
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.911
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.911
AAH72110 Xenopus laevis AAH72110 I 0.907
Q6IP09 Xenopus laevis Q6IP09 I 0.907
AAI08463 Xenopus laevis AAI08463 I 0.907
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.904
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.888
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.882
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.882
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.882
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.871
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.871
PABPC3 Homo sapiens ENSG00000151846 D 0.868
AAH73435 Xenopus laevis AAH73435 I 0.861
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.861
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.861
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.857
PABPC4 Gallus gallus ENSGALG00000003800 I 0.854
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.850
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.847
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.843
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.843
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.843
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.843
pabpc4 Danio rerio ENSDARG00000059259 I 0.843
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.843
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.843
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.843
PABPC4 Homo sapiens ENSG00000090621 D 0.843
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.839
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.839
Gm10110 Mus musculus ENSMUSG00000062093 I 0.839
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.839
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.839
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.839
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.839
LOC100054235 Equus caballus ENSECAG00000009396 I 0.839
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.839
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.839
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.839
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.839
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.836
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.836
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.836
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.836
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.832
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.832
pabpc1l Danio rerio ENSDARG00000002597 I 0.832
PABPC1L Gallus gallus ENSGALG00000004123 I 0.832
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.829
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.825
Q6GR16 Xenopus laevis Q6GR16 I 0.825
AAH71118 Xenopus laevis AAH71118 I 0.825
AAH80020 Xenopus laevis AAH80020 I 0.821
AAK29408 Xenopus laevis AAK29408 I 0.821
Q98SP8 Xenopus laevis Q98SP8 I 0.821
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.821
LOC100056021 Equus caballus ENSECAG00000020699 I 0.818
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.818
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.811
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.807
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.806
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.804
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.800
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.800
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.793
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.789
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.786
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.782
PABPC1L Bos taurus ENSBTAG00000016849 I 0.782
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.782
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.779
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.779
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.775
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.775
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.775
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.771
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.771
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.771
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.771
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.771
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.771
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.771
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.768
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.768
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.768
PABPC1L Homo sapiens ENSG00000101104 I 0.768
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.764
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.764
LOC100070836 Equus caballus ENSECAG00000022681 I 0.764
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.764
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.761
ISCW014211 Ixodes scapularis ISCW014211 I 0.761
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.761
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.754
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.754
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.754
AGAP011092 Anopheles gambiae AGAP011092 I 0.754
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.754
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.754
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.754
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.754
AAEL010318 Aedes aegypti AAEL010318 I 0.750
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.750
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.750
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.750
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.746
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.746
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.746
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.743
PHUM617090 Pediculus humanus PHUM617090 I 0.743
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.743
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.743
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.739
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.736
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.736
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.732
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.732
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.730
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.730
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.730
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.726
185682 Helobdella robusta 185682 I 0.722
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.718
GI18654 Drosophila mojavensis FBgn0141393 I 0.712
GK19652 Drosophila willistoni FBgn0221650 I 0.712
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.711
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.711
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.709
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.709
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.707
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.707
GH21052 Drosophila grimshawi FBgn0128514 I 0.705
GJ21671 Drosophila virilis FBgn0208790 I 0.705
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.704
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.702