gw.34.129.1 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw.34.129.1 T53429_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.768
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.768
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.768
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw.34.129.1 RRM 12 80

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.826
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.812
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.812
FP236187.1 Danio rerio ENSDARG00000010083 I 0.812
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.812
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.812
rbfox1l Danio rerio ENSDARG00000021184 I 0.812
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.812
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.812
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.797
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.797
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.797
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.797
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.797
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.797
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.797
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.797
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.797
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.797
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.797
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.797
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.797
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.797
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.797
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.797
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.797
RBFOX3 Homo sapiens ENSG00000167281 I 0.797
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.797
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.797
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.797
RBFOX3 Equus caballus ENSECAG00000023811 I 0.797
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.797
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.797
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.783
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.783
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.768
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.768
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.768
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.768
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.768
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.768
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.768
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.768
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.768
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.768
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.768
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.768
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.768
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.768
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.768
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.768
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.768
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.768
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.768
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.768
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.768
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.768
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.768
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.768
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.768
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.768
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.768
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.768
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.768
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.768
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.768
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.768
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.768
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.768
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.768
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.768
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.768
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.768
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.768
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.768
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.768
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.768
a2bp1 Danio rerio ENSDARG00000014746 D 0.768
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.768
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.768
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.768
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.768
AAI55921 Xenopus laevis AAI55921 I 0.768
A4F5G6 Xenopus laevis A4F5G6 I 0.768
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.768
AAI69563 Xenopus laevis AAI69563 I 0.768
CAL91350 Xenopus laevis CAL91350 I 0.768
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.768
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.768
CAL91351 Xenopus laevis CAL91351 I 0.768
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.768
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.768
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.768
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.768
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.768
RBM9 Gallus gallus ENSGALG00000012540 I 0.768
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.768
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.768
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.768
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.768
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.768
A2BP1 Gallus gallus ENSGALG00000007366 I 0.768
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.768
LOC100069362 Equus caballus ENSECAG00000018923 I 0.768
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.768
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.768
A2BP1 Homo sapiens ENSG00000078328 D 0.768
LOC100066233 Equus caballus ENSECAG00000012667 I 0.768
RBFOX2 Homo sapiens ENSG00000100320 I 0.768
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.768
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.754
ISCW013123 Ixodes scapularis ISCW013123 I 0.754
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.754
Smp_139980 Schistosoma mansoni Smp_139980 I 0.739
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.739
PHUM098700 Pediculus humanus PHUM098700 I 0.739
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.739
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.739
GD14245 Drosophila simulans FBgn0185930 I 0.725
GM25214 Drosophila sechellia FBgn0180074 I 0.725
GJ13667 Drosophila virilis FBgn0200888 I 0.725
GE21749 Drosophila yakuba FBgn0238995 I 0.725
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.725
GI11474 Drosophila mojavensis FBgn0134235 I 0.725
GK12272 Drosophila willistoni FBgn0214282 I 0.725
Smp_138880 Schistosoma mansoni Smp_138880 I 0.725
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.725
AAEL017168 Aedes aegypti AAEL017168 I 0.725
AGAP006089 Anopheles gambiae AGAP006089 I 0.725
GH14949 Drosophila grimshawi FBgn0122424 I 0.725
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.725
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.725
GF10597 Drosophila ananassae FBgn0087638 I 0.725
a2bp1 Drosophila melanogaster FBgn0052062 D 0.725
GG15438 Drosophila erecta FBgn0107689 I 0.725
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.714
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.710
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.710