ENSCING00000013912 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000013912 T35441_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.826
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.826
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.826
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.768
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.710
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000025341 RRM 162 230
ENSCINP00000025342 RRM 162 230
ENSCINP00000025343 RRM 123 191

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.855
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.841
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.841
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.841
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.841
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.841
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.841
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.841
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.841
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.841
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.841
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.841
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.841
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.841
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.841
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.841
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.841
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.841
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.841
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.841
RBFOX3 Equus caballus ENSECAG00000023811 I 0.841
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.841
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.841
RBFOX3 Homo sapiens ENSG00000167281 I 0.841
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.841
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.841
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.841
FP236187.1 Danio rerio ENSDARG00000010083 I 0.841
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.841
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.826
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.826
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.826
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.826
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.826
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.826
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.826
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.826
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.826
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.826
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.826
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.826
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.826
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.826
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.826
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.826
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.826
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.826
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.826
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.826
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.826
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.826
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.826
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.826
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.826
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.826
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.826
CAL91351 Xenopus laevis CAL91351 I 0.826
A4F5G6 Xenopus laevis A4F5G6 I 0.826
CAL91350 Xenopus laevis CAL91350 I 0.826
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.826
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.826
RBM9 Gallus gallus ENSGALG00000012540 I 0.826
A2BP1 Gallus gallus ENSGALG00000007366 I 0.826
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.826
a2bp1 Danio rerio ENSDARG00000014746 D 0.826
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.826
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.826
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.826
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.826
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.826
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.826
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.826
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.826
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.826
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.826
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.826
RBFOX2 Homo sapiens ENSG00000100320 I 0.826
LOC100066233 Equus caballus ENSECAG00000012667 I 0.826
A2BP1 Homo sapiens ENSG00000078328 D 0.826
LOC100069362 Equus caballus ENSECAG00000018923 I 0.826
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.826
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.826
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.826
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.826
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.826
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.826
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.826
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.826
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.826
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.826
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.826
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.826
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.826
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.826
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.826
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.826
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.826
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.826
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.812
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.812
rbfox1l Danio rerio ENSDARG00000021184 I 0.812
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.812
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.812
AAI55921 Xenopus laevis AAI55921 I 0.812
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.812
AAI69563 Xenopus laevis AAI69563 I 0.812
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.812
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.812
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.812
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.797
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.797
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.797
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.797
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.783
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.783
ISCW013123 Ixodes scapularis ISCW013123 I 0.783
AAEL017168 Aedes aegypti AAEL017168 I 0.768
AGAP006089 Anopheles gambiae AGAP006089 I 0.768
GH14949 Drosophila grimshawi FBgn0122424 I 0.768
GI11474 Drosophila mojavensis FBgn0134235 I 0.768
GM25214 Drosophila sechellia FBgn0180074 I 0.768
GG15438 Drosophila erecta FBgn0107689 I 0.768
GF10597 Drosophila ananassae FBgn0087638 I 0.768
a2bp1 Drosophila melanogaster FBgn0052062 D 0.768
GD14245 Drosophila simulans FBgn0185930 I 0.768
GJ13667 Drosophila virilis FBgn0200888 I 0.768
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.768
PHUM098700 Pediculus humanus PHUM098700 I 0.768
GE21749 Drosophila yakuba FBgn0238995 I 0.768
GK12272 Drosophila willistoni FBgn0214282 I 0.768
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.768
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.754
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.754
Bm1_08900 Brugia malayi Bm1_08900 I 0.725
Smp_139980 Schistosoma mansoni Smp_139980 I 0.725
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.725
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.725
LOAG_04679 Loa loa LOAG_04679 I 0.725
CJA09998 Caenorhabditis japonica CJA09998 I 0.710
fox-1 Caenorhabditis elegans T07D1.4 D 0.710
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.710
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.710
CBG02108 Caenorhabditis briggsae CBG02108 I 0.710
CBN11651 Caenorhabditis brenneri CBN11651 I 0.710
CRE07377 Caenorhabditis remanei CRE07377 I 0.710