CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G474658
(
Zea mays
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
GRMZM2G474658
T07616_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G474658_P03
RRM
13
75
LYVGRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVDGSRIV
GRMZM2G474658_P03
CCHC ZF
102
119
GRCFNCGVDGHWARDCKA
GRMZM2G474658_P03
CCHC ZF
124
141
NKCYRCGERGHIERNCQN
GRMZM2G474658_P04
CCHC ZF
10
27
GRCFNCGVDGHWARDCKA
GRMZM2G474658_P04
CCHC ZF
32
49
NKCYRCGERGHIERNCQN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Zea mays
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29805.m001527
Ricinus communis
29805.m001527
N
0.818
AC235022_4
Medicago truncatula
AC235022_4
N
0.778
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.944
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.828
BGIOSIBCE000441
Oryza indica
BGIOSIBCE000441
N
0.778
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.899
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.778
BRADI2G34687
Brachypodium distachyon
BRADI2G34687
N
0.808
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.879
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
0.818
cassava28872.valid.m1
Manihot esculenta
cassava28872.valid.m1
N
0.818
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.798
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
0.818
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.828
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.798
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.798
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.798
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.808
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.944
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.972
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.889
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.818
LjT38D03.70.nd
Lotus japonicus
LjT38D03.70.nd
N
0.818
LjT38D03.80.nd
Lotus japonicus
LjT38D03.80.nd
N
0.758
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.778
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.929
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.899
mgf009930m
Mimulus guttatus
mgf009930m
N
0.818
PK26144.1
Cannabis sativa
PK26144.1
N
0.778
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.808
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.818
ppa009074m
Prunus persica
ppa009074m
N
0.808
ppa009294m
Prunus persica
ppa009294m
N
0.788
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.747
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.970
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.879