Sb09g001920 (Sorghum bicolor)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		Sb09g001920 T07432_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb09g001920.1 RRM 13 75
Sb09g001920.1 CCHC ZF 102 119
Sb09g001920.1 CCHC ZF 124 141

Links

Other CCHC ZF,RRM family RBPs
Other Sorghum bicolor RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.970
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.949
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.929
SB09G001910 Sorghum bicolor Sb09g001910 N 0.909
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.909
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.899
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.899
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.899
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.879
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.859
29805.m001527 Ricinus communis 29805.m001527 N 0.859
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.859
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.848
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.838
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.838
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.838
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.838
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.828
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.818
ppa009294m Prunus persica ppa009294m N 0.818
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.818
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.808
ppa009074m Prunus persica ppa009074m N 0.808
mgf009930m Mimulus guttatus mgf009930m N 0.808
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.808
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.808
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.808
AC235022_4 Medicago truncatula AC235022_4 N 0.798
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.798
PK26144.1 Cannabis sativa PK26144.1 N 0.788
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.788
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.778
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.768
SB03G005500 Sorghum bicolor Sb03g005500 N 0.747
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.747
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.747