CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSETEG00000004125
(
Echinops telfairi
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSETEG00000004125
T16840_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
YB-1
M111_0.6
Homo sapiens
AACAUCD
RNAcompete
Ray et al.(2013)
RNCMPT00116
0.718
YB-1
M081_0.6
Homo sapiens
AACAUC
RNAcompete
Ray et al.(2013)
RNCMPT00083
0.718
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000003382
CSD
76
128
XXNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP
Links
Other
CSD
family RBPs
Other
Echinops telfairi
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH77935
Xenopus laevis
AAH77935
I
0.000
AAH81071
Xenopus laevis
AAH81071
I
0.000
Ame_R012008
Ailuropoda melanoleuca
Ame_R012008
I
0.000
FUS
Anolis carolinensis
ENSACAG00000006776
I
0.000
FUS_BOVIN
Bos taurus
ENSBTAG00000005757
I
0.000
TAF15
Bos taurus
ENSBTAG00000006916
I
0.000
FUS
Canis familiaris
ENSCAFG00000016862
I
0.000
TAF15
Canis familiaris
ENSCAFG00000018176
I
0.000
FUS
Choloepus hoffmanni
ENSCHOG00000010780
I
0.000
ENSCJAG00000002807
Callithrix jacchus
ENSCJAG00000002807
I
0.000
LOC100395517
Callithrix jacchus
ENSCJAG00000003169
I
0.000
LOC100391580
Callithrix jacchus
ENSCJAG00000014961
I
0.000
TAF15
Cavia porcellus
ENSCPOG00000010259
I
0.000
TAF15
Danio rerio
ENSDARG00000070019
I
0.000
TAF15
Dasypus novemcinctus
ENSDNOG00000006956
I
0.000
LOC100071562
Equus caballus
ENSECAG00000000718
I
0.000
FUS
Erinaceus europaeus
ENSEEUG00000004934
I
0.000
TAF15
Echinops telfairi
ENSETEG00000001337
N
0.000
FUS
Homo sapiens
ENSG00000089280
D
0.000
TAF15
Homo sapiens
ENSG00000172660
I
0.000
TAF15
Gallus gallus
ENSGALG00000002060
I
0.000
FUS
Gorilla gorilla
ENSGGOG00000003707
I
0.000
TAF15
Gorilla gorilla
ENSGGOG00000005693
I
0.000
TAF15
Loxodonta africana
ENSLAFG00000018332
I
0.000
TAF15
Macropus eugenii
ENSMEUG00000006009
I
0.000
TAF15
Meleagris gallopavo
ENSMGAG00000003842
I
0.000
TAF15
Myotis lucifugus
ENSMLUG00000002870
I
0.000
TAF15
Macaca mulatta
ENSMMUG00000003305
I
0.000
FUS
Macaca mulatta
ENSMMUG00000019637
I
0.000
FUS
Monodelphis domestica
ENSMODG00000001889
I
0.000
TAF15
Monodelphis domestica
ENSMODG00000019123
I
0.000
Taf15
Mus musculus
ENSMUSG00000020680
I
0.000
Fus
Mus musculus
ENSMUSG00000030795
I
0.000
FUS
Ornithorhynchus anatinus
ENSOANG00000005606
I
0.000
TAF15
Ornithorhynchus anatinus
ENSOANG00000014273
I
0.000
TAF15
Oryctolagus cuniculus
ENSOCUG00000002838
I
0.000
FUS
Oryctolagus cuniculus
ENSOCUG00000021526
I
0.000
TAF15
Otolemur garnettii
ENSOGAG00000011719
N
0.000
TAF15
Procavia capensis
ENSPCAG00000009582
I
0.000
ENSPPYG00000008194
Pongo pygmaeus
ENSPPYG00000008194
I
0.000
FUS
Pan troglodytes
ENSPTRG00000008038
I
0.000
TAF15
Pan troglodytes
ENSPTRG00000009026
I
0.000
FUS
Pteropus vampyrus
ENSPVAG00000003097
I
0.000
TAF15
Pteropus vampyrus
ENSPVAG00000003952
I
0.000
Taf15
Rattus norvegicus
ENSRNOG00000010604
I
0.000
ENSRNOG00000024836
Rattus norvegicus
ENSRNOG00000024836
I
0.000
TAF15
Sorex araneus
ENSSARG00000012092
I
0.000
FUS
Sus scrofa
ENSSSCG00000007759
I
0.000
TAF15
Sus scrofa
ENSSSCG00000017707
I
0.000
TAF15
Taeniopygia guttata
ENSTGUG00000004702
I
0.000
FUS
Tarsius syrichta
ENSTSYG00000011757
I
0.000
TAF15
Tursiops truncatus
ENSTTRG00000014145
I
0.000
fus
Xenopus tropicalis
ENSXETG00000001951
I
0.000