FXR1 (Monodelphis domestica)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSMODG00000021294 T19114_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.992
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000026620 KH 203 262
ENSMODP00000026620 KH 267 334
ENSMODP00000035589 KH 202 261
ENSMODP00000035589 KH 266 333
ENSMODP00000035590 KH 203 262
ENSMODP00000035590 KH 267 334

Links

Other KH family RBPs
Other Monodelphis domestica RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAC59682 Xenopus laevis AAC59682 I 0.938
AAC59683 Xenopus laevis AAC59683 I 0.769
AAH43638 Xenopus laevis AAH43638 I 0.930
AAH73457 Xenopus laevis AAH73457 I 0.945
AAI12953 Xenopus laevis AAI12953 I 0.777
AAI31885 Xenopus laevis AAI31885 I 0.945
AAI70204 Xenopus laevis AAI70204 I 0.777
AAY79165 Xenopus laevis AAY79165 I 0.945
AAY79166 Xenopus laevis AAY79166 I 0.945
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.705
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.791
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.992
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.798
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.953
FXR2 Bos taurus ENSBTAG00000005462 I 0.783
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.992
FXR1 Canis familiaris ENSCAFG00000011582 I 0.992
FXR2 Canis familiaris ENSCAFG00000016685 I 0.791
FMR1 Canis familiaris ENSCAFG00000019085 I 0.815
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.992
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.783
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.992
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.783
fxr1 Danio rerio ENSDARG00000022968 I 0.853
fmr1 Danio rerio ENSDARG00000037433 I 0.715
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.767
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.828
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.828
LOC100147323 Equus caballus ENSECAG00000007051 I 0.783
FXR1 Equus caballus ENSECAG00000007560 I 0.992
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.977
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.783
FXR2 Echinops telfairi ENSETEG00000018613 I 0.775
FXR2 Felis catus ENSFCAG00000009620 I 0.783
FXR1 Homo sapiens ENSG00000114416 D 0.992
FXR2 Homo sapiens ENSG00000129245 D 0.783
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.829
FMR1 Gasterosteus aculeatus ENSGACG00000018742 I 0.737
FXR2 Gasterosteus aculeatus ENSGACG00000019983 I 0.703
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.961
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.786
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.992
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.775
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.992
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.961
FXR2 Microcebus murinus ENSMICG00000014799 I 0.783
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.752
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.992
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.992
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.783
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.783
Fxr2 Mus musculus ENSMUSG00000018765 I 0.783
Fxr1 Mus musculus ENSMUSG00000027680 I 0.984
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 1.000
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.783
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.992
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.945
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.783
FMR1 Oryzias latipes ENSORLG00000009094 I 0.756
FXR2 Oryzias latipes ENSORLG00000011571 I 0.792
FXR1 Oryzias latipes ENSORLG00000011787 I 0.853
FXR2 Procavia capensis ENSPCAG00000013184 I 0.775
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.783
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.992
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.783
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.992
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.984
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.783
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.783
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.867
FXR1 Sus scrofa ENSSSCG00000011769 I 0.984
FXR2 Sus scrofa ENSSSCG00000017953 I 0.783
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.783
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.783
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.953
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.822
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.746
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.822
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.754
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.969
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.783
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.992
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.783
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.992
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.945
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.785
estExt_fgenesh1_pg.C_690020 Daphnia pulex estExt_fgenesh1_pg.C_690020 N 0.705
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.712
P51113 Xenopus laevis P51113 I 0.769
P51115 Xenopus laevis P51115 I 0.945
PHUM440700 Pediculus humanus PHUM440700 I 0.720
Q2KHP9 Xenopus laevis Q2KHP9 I 0.777
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.930