FXR1 (Tetraodon nigroviridis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTNIG00000003790 T19597_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.822
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.822
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000004988 KH 220 279
ENSTNIP00000004988 KH 283 351
ENSTNIP00000006390 KH 220 279
ENSTNIP00000006390 KH 283 351

Links

Other KH family RBPs
Other Tetraodon nigroviridis RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAC59682 Xenopus laevis AAC59682 I 0.806
AAC59683 Xenopus laevis AAC59683 I 0.715
AAEL009326 Aedes aegypti AAEL009326 I 0.705
AAH43638 Xenopus laevis AAH43638 I 0.806
AAH73457 Xenopus laevis AAH73457 I 0.814
AAI12953 Xenopus laevis AAI12953 I 0.723
AAI31885 Xenopus laevis AAI31885 I 0.814
AAI70204 Xenopus laevis AAI70204 I 0.723
AAY79165 Xenopus laevis AAY79165 I 0.814
AAY79166 Xenopus laevis AAY79166 I 0.814
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.720
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.829
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.822
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.837
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.822
FXR2 Bos taurus ENSBTAG00000005462 I 0.822
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.822
FXR1 Canis familiaris ENSCAFG00000011582 I 0.822
FXR2 Canis familiaris ENSCAFG00000016685 I 0.829
FMR1 Canis familiaris ENSCAFG00000019085 I 0.738
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.822
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.822
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.822
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.822
fxr2 Danio rerio ENSDARG00000016260 I 0.724
fxr1 Danio rerio ENSDARG00000022968 I 0.876
fmr1 Danio rerio ENSDARG00000037433 I 0.708
CABZ01043311.1 Danio rerio ENSDARG00000078462 I 0.724
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.814
LOC100147323 Equus caballus ENSECAG00000007051 I 0.822
FXR1 Equus caballus ENSECAG00000007560 I 0.822
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.806
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.822
FXR1 Echinops telfairi ENSETEG00000006891 I 0.822
FXR2 Echinops telfairi ENSETEG00000018613 I 0.814
FXR2 Felis catus ENSFCAG00000009620 I 0.822
FXR1 Homo sapiens ENSG00000114416 D 0.822
FXR2 Homo sapiens ENSG00000129245 D 0.822
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.891
FXR2 Gasterosteus aculeatus ENSGACG00000019983 I 0.710
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.829
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.725
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.822
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.814
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.822
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.829
FXR2 Microcebus murinus ENSMICG00000014799 I 0.822
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.791
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.822
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.822
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.822
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.822
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.822
Fxr2 Mus musculus ENSMUSG00000018765 I 0.822
Fxr1 Mus musculus ENSMUSG00000027680 I 0.829
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.822
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.822
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.822
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.783
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.822
FMR1 Oryzias latipes ENSORLG00000009094 I 0.710
FXR2 Oryzias latipes ENSORLG00000011571 I 0.815
FXR1 Oryzias latipes ENSORLG00000011787 I 0.915
FXR2 Procavia capensis ENSPCAG00000013184 I 0.814
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.822
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.822
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.822
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.822
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.829
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.822
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.822
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.736
FXR1 Sus scrofa ENSSSCG00000011769 I 0.829
FXR2 Sus scrofa ENSSSCG00000017953 I 0.822
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.822
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.822
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.822
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.769
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.984
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.762
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.798
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.822
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.822
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.822
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.822
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.822
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.731
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.712
P51113 Xenopus laevis P51113 I 0.715
P51115 Xenopus laevis P51115 I 0.814
Q2KHP9 Xenopus laevis Q2KHP9 I 0.723
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.806