XM_002882529.1 (Arabidopsis lyrata)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_kg.3__864__AT3G08620.1 T20068_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__864__AT3G08620.1 KH 147 219

Links

Other KH family RBPs
Other Arabidopsis lyrata RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27955.m000377 Ricinus communis 27955.m000377 N 0.840
29945.m000086 Ricinus communis 29945.m000086 N 0.716
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.808
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.959
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.753
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.813
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.716
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.827
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.842
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.853
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.827
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.808
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.784
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.795
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.867
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.760
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.784
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.840
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.711
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.853
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.737
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.711
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.776
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.800
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.853
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.743
MDP0000119110 Malus x domestica MDP0000119110 N 0.840
MDP0000186494 Malus x domestica MDP0000186494 N 0.853
MDP0000501473 Malus x domestica MDP0000501473 N 0.840
MDP0000665847 Malus x domestica MDP0000665847 N 0.853
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.822
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.829
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.827
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.827
mgf005196m Mimulus guttatus mgf005196m N 0.853
mgf011994m Mimulus guttatus mgf011994m N 0.737
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.811
PK22673.1 Cannabis sativa PK22673.1 N 0.797
PK23097.1 Cannabis sativa PK23097.1 N 0.840
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.867
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.743
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.776
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.770
ppa009701m Prunus persica ppa009701m N 0.867
SB01G003680 Sorghum bicolor Sb01g003680 N 0.724
SB02G006770 Sorghum bicolor Sb02g006770 N 0.763