B9INJ7_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0019s15270 T20235_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s15270.1 KH 144 213

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.903
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.886
PK22673.1 Cannabis sativa PK22673.1 N 0.878
PK23097.1 Cannabis sativa PK23097.1 N 0.875
29945.m000086 Ricinus communis 29945.m000086 N 0.871
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.871
MDP0000186494 Malus x domestica MDP0000186494 N 0.863
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.863
MDP0000665847 Malus x domestica MDP0000665847 N 0.863
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.861
MDP0000501473 Malus x domestica MDP0000501473 N 0.861
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.861
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.861
MDP0000119110 Malus x domestica MDP0000119110 N 0.861
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.859
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.853
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.845
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.840
ppa009701m Prunus persica ppa009701m N 0.840
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.840
SB02G006770 Sorghum bicolor Sb02g006770 N 0.833
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.833
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.829
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.827
27955.m000377 Ricinus communis 27955.m000377 N 0.824
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.824
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.824
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.817
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.813
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.811
mgf011994m Mimulus guttatus mgf011994m N 0.806
SB01G003680 Sorghum bicolor Sb01g003680 N 0.795
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.792
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.789
mgf005196m Mimulus guttatus mgf005196m N 0.787
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.784
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.784
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.784
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.782
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.782
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.781
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.776
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.771
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.770
GRMZM2G085582 Zea mays GRMZM2G085582 N 0.735
BRADI1G04120 Brachypodium distachyon BRADI1G04120 N 0.734
LOC_Os01g60260 Oryza sativa LOC_Os01g60260 N 0.728
SB09G023640 Sorghum bicolor Sb09g023640 N 0.723
GRMZM2G122569 Zea mays GRMZM2G122569 N 0.723
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.722
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.716
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.714
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.711
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.708
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.706