cassava38069.valid.m1 (Manihot esculenta)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 cassava38069.valid.m1 T20684_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava38069.valid.m1 KH 145 212

Links

Other KH family RBPs
Other Manihot esculenta RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29945.m000086 Ricinus communis 29945.m000086 N 0.897
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.871
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.868
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.836
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.817
mgf011994m Mimulus guttatus mgf011994m N 0.814
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.811
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.811
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.806
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.806
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.803
PK22673.1 Cannabis sativa PK22673.1 N 0.797
MDP0000501473 Malus x domestica MDP0000501473 N 0.792
MDP0000119110 Malus x domestica MDP0000119110 N 0.792
PK23097.1 Cannabis sativa PK23097.1 N 0.792
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.789
SB02G006770 Sorghum bicolor Sb02g006770 N 0.789
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.789
27955.m000377 Ricinus communis 27955.m000377 N 0.784
MDP0000665847 Malus x domestica MDP0000665847 N 0.781
MDP0000186494 Malus x domestica MDP0000186494 N 0.781
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.778
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.778
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.773
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.773
SB01G003680 Sorghum bicolor Sb01g003680 N 0.767
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.761
ppa009701m Prunus persica ppa009701m N 0.760
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.760
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.760
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.757
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.757
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.757
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.757
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.753
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.750
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.747
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.743
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.736
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.724
mgf005196m Mimulus guttatus mgf005196m N 0.720
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.718
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.718
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.716
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.711
BGIOSIBCE024206 Oryza indica BGIOSIBCE024206 N 0.709